Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1213 ATGGAGCAAGGTCAATTCTGGATGTGGACGAAGAGGAAATACTCTTTGAGCTCTTCTAATCTCATCACTTCATCAACAAAACCTTCGTCTTCTTCTTATGATGATTCTTCATGGGAGGAGCAAGCTTTTGCTGAAGATGCTTCTGGGCCTCTTGGTGGATGCATATGGCCTCCCAGATCATACACTTGCAGTTTCTGCAGAAGAGAGTTCAGATCAGCACAAGCTCTTGGAGGCCACATGAATGTTCATAGAAGAGATAGAGCCAGACTCAAGCAGCCTTCAAGCCCCCAAAATAACGAACTTAATCAAATTCCTAATACTTCTTCGTTTATGGGTTTCCTATACCCTTATAATCATAATTGTTCTACTGCTAACCCTAATTCTGTTCTTGTAGCTTCTTCACTTTCTGATAACATAATGGTTCCACCTTATAATTCTTCTTCTATTATTCCCCCATCACAAGGACTTAAGGTGAATTCTTCTAATTATTCTCCTCTCAATTCTTCTTCTAAATCGAACTGCTCAAACTTATTGGCTGAAGCTGAGAAGATGACAGAGGTGTTGGATTGTGATGGATGCGAGGACGATAATGGAAAATCTGATTTGGCTTTTAGTTTAAATTTGGTCGTGTGTAGAGGTATTGAAACAAAGGAGGAAGCTATTATAAGTTGCAAGAAGAGGAGAACTTCTGAAACTGCATCGATTCTTCCTCTCTTCCCAAATTCAAATTCTTCAGTTGAATTTAGCCCTAGCTCCAAACAAGAGCTAGATCTGGAGCTAAGGCTGGGTCAAAGCAAGCACAAGAGCCTGTATGAGTCCCATGATGTTTCACTTTTGATTCATCAGTCACTTTCAAATGATGTTGCTGCATCAGTTTAG 879 0.4016 MEQGQFWMWTKRKYSLSSSNLITSSTKPSSSSYDDSSWEEQAFAEDASGPLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNNELNQIPNTSSFMGFLYPYNHNCSTANPNSVLVASSLSDNIMVPPYNSSSIIPPSQGLKVNSSNYSPLNSSSKSNCSNLLAEAEKMTEVLDCDGCEDDNGKSDLAFSLNLVVCRGIETKEEAIISCKKRRTSETASILPLFPNSNSSVEFSPSSKQELDLELRLGQSKHKSLYESHDVSLLIHQSLSNDVAASV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1213 292 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Lele37g1213 292 SMART c2h2final6 61 83 IPR013087 -
Lele37g1213 292 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lele37g1213 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Lele37g1213 292 Coils Coil 292 292 - -
Lele37g1213 292 Gene3D Classic Zinc Finger 58 110 - -
Lele37g1213 292 PANTHER OS07G0101800 PROTEIN 32 265 - -
Lele37g1213 292 Pfam C2H2-type zinc finger 61 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1213 Lele-ChrLele37 21465583 21466834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1213 35 92 C2H2 Transcription Factor Family AT2G37740 81.034 2.24e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele37g1213 zf-C2H2_6 5.3e-06 CL0361