Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1145 ATGGCCTTGCAGGGAACGGAGAACGCATACGAAGATACAAATCTTGCCGACAATGAACAAGAAGAATTCTTCGAATCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCTATAGTGCTGTCTTGTGGTCACATATCCTGTTTTTGGTGTGCCCATCAGTCAATGAGCCCCCTTTGTGAGTCTCATTGTCCAATTTGCCGGCATCCATATTATCACTTTCCAACTGTCTGTTGGATGCTTCACTTCTTGCTTATGAAAATGTATCCTGTTGCTTACAAGAGAAGGGAAATTCAAACTCTTGAGGAAGAAAAGAAAGGGGATTGCTATTCTACTCAATTTGATGACAATAATCTCGTATCAGAAGTTAAGTTTGATCATCCAAGTACTTCATCTTCCTGCTATGCTGGAAATCTGGTTTCCAACCCTCAGAATCCAGGACTTTCTGCAAGTATGGAGCAATCAGGGTCTGAAACTCAAAAGCAACATAACTGGACCGTCTGTTCTAAAGATGTTTTTGGTGGGACTGCTGAAGCTTTTGGGACTCCTTCTCAAGTAAAAATGCTTCCTCAGAACGATAGGCAACAGAAGATATCAGTTGCAGATGTGATGTGTTCAACATGCAAGCAACTGCTTTTTCATCCTGTTGTTCTTAACTGTGGTCATGTATACTGTGAGTCTTGTATCAAGAACTCAGCTGATGAGATGCTTAGATGCCAAATTTGTCAACTTCCACATCCAAGAGGATTTCCAAGAGTTTGTTTGGAGCTTGATCACTTTATAAAGGAACAATTTCCTGAGGAATATGAAAAACAAAGAGATGCTGTGCAACTTAGGCATATCAATGATAAACCTGAGACCCCTTCTTGTTCGCTGAATAAGGGTGGAGGAGGAAAAGCACCATGGTGGTCTGATCATCACTCAAAAGTACATTTTGGAGTTGGCTGTGATTTTTGTGGGATGTATCCAATTGTTGGGGACAGATACAGATGCAAAGACTGTAAGGAGAAGATTGGTTTCGACCTTTGTGCCGATTGTTATAAAATTCGCAGCAAGATTCCGGGTCGGTTCAATCAGCAGCACACTCCAGATCATGAGTTTGAGCTTAAGCAAATCAACATTATCCATAACATAATGATGAGGCTGGTTACTGGACAGTTAGGAAATGGTTCCATTGAGAATTTGCCTCTGGAAAGCATAGAGTTTAGACCTGAAGATCCCGATTTGGTTGTTGATGGTGATGGAGAAGATACCCAGAATGACTCTGAAGGCACTAACTGA 1284 0.4136 MALQGTENAYEDTNLADNEQEEFFESFVCCVCLDLLYKPIVLSCGHISCFWCAHQSMSPLCESHCPICRHPYYHFPTVCWMLHFLLMKMYPVAYKRREIQTLEEEKKGDCYSTQFDDNNLVSEVKFDHPSTSSSCYAGNLVSNPQNPGLSASMEQSGSETQKQHNWTVCSKDVFGGTAEAFGTPSQVKMLPQNDRQQKISVADVMCSTCKQLLFHPVVLNCGHVYCESCIKNSADEMLRCQICQLPHPRGFPRVCLELDHFIKEQFPEEYEKQRDAVQLRHINDKPETPSCSLNKGGGGKAPWWSDHHSKVHFGVGCDFCGMYPIVGDRYRCKDCKEKIGFDLCADCYKIRSKIPGRFNQQHTPDHEFELKQINIIHNIMMRLVTGQLGNGSIENLPLESIEFRPEDPDLVVDGDGEDTQNDSEGTN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1145 427 Pfam RING-type zinc-finger 206 239 IPR027370 -
Lele37g1145 427 ProSiteProfiles Zinc finger ZZ-type profile. 312 376 IPR000433 GO:0008270
Lele37g1145 427 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Lele37g1145 427 SMART ring_2 29 68 IPR001841 -
Lele37g1145 427 SMART ring_2 206 243 IPR001841 -
Lele37g1145 427 Pfam Zinc finger, ZZ type 312 350 IPR000433 GO:0008270
Lele37g1145 427 FunFam E3 ubiquitin-protein ligase PRT1 306 371 - -
Lele37g1145 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 97 IPR013083 -
Lele37g1145 427 CDD RING-HC 29 68 - -
Lele37g1145 427 FunFam E3 ubiquitin-protein ligase PRT1 193 288 - -
Lele37g1145 427 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Lele37g1145 427 FunFam E3 ubiquitin-protein ligase PRT1 19 115 - -
Lele37g1145 427 SUPERFAMILY RING/U-box 305 369 - -
Lele37g1145 427 Pfam Zinc finger, C3HC4 type (RING finger) 28 72 - -
Lele37g1145 427 MobiDBLite consensus disorder prediction 405 427 - -
Lele37g1145 427 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Lele37g1145 427 SUPERFAMILY RING/U-box 18 78 - -
Lele37g1145 427 SUPERFAMILY RING/U-box 203 266 - -
Lele37g1145 427 PANTHER UNCHARACTERIZED 20 389 - -
Lele37g1145 427 Gene3D - 305 371 IPR043145 -
Lele37g1145 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 290 IPR013083 -
Lele37g1145 427 SMART zz_5 311 357 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1145 Lele-ChrLele37 20985560 20991248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1145 14 69 C3H Transcription Factor Family AT1G74990 36.842 2.36e-06 45.1