Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1130 ATGAAACGCCCGATCGATGACATCGTTGTGCCCTTGGCTTCGTCGGCTTCTTCCTCCGCTGCCGCTGCACCTCAGAAGCCGGTGTTCTTAACGAAAGCTCAGCGTGAAGAATTGGCTCTTAAGCGGCGCCAAGAAGAAATTGCCGAACAAAGACGCCATCAGGAACAGCTGCTTTCTCGGAACCGCCCATCCGACCCAAACTCCGATTCCGACCGACGTGACCGTGAGCGGGACCGGGACCGGGACCGGGACCGGGACCGCGACCGCGACCGCGACCGCGACCGGGGCCGGGATAGAGAGCGGGAGCGAGAGAGGGACCGTGAGCGAGAGCGAGATAGGGCTCGCGATCGGGACCGTGAAACAGAACGCAGGAACCGCGAGAGGGAACGTGAAGAGGAGGCTAAGGCTCGTGAGCGTGCTCGGAATGATAAATTGCAAGAGCGTGAGCGTGAGAAAGAGCTGGAAGCGATCAAGGAGCAGTATCTTGGTTCGAAGAAGCCTAAGAAGCGGGTTATTAAACCCAGTGAGAAGTTTCGTTTTTCCTTCGATTGGGAGAACACGGAGGATACTTCTCGTGACATGAACATTCTTTACCAGAACCCTCACGAAGCGCAGCTTCTCTTCGGTCGTGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAGAAGCTTGCCGCTAAGAATGAGAAGGAGATGCGCGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAGCCCGAAGAGGCCGTTGCACAACGGCGGAAGGAGGCTGCTGCTGACCTCTATGACACCTTTGACATGAGAGTTGACCGCCACTGGAGCGAGAAGAAGCTTGATGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTTCAACATTTCCTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTCCTGAGCTATTGAAGGCGGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCCATTCAGATGGCTTCCATTCCTCTTGGCCTTCAACAGCGTGATGTCATTGGCATTGCCGAGACAGGTTCAGGTAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCCATAAGTGAAGAGAATGAAGCTGAGGGTCCCTATGCTGTCGTCATGGCACCTACGCGTGAACTTGCTCAGCAGATTGAGGATGAGACCGTGAAGTTTGCCCAGTATCTTGGGATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAGATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGATTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCTTCCAGCAATATGAAGCCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTACAGAACCACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCTAGGAAATACTTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGACGAAGGAATCTGAAAAGTTTTTCAAACTGAAACGGTTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTTGTTAACACTAAGAAAAATGCTGATATGGTTGCAAAGAATTTGGACAAGGAAGGCTACCGTGTAACCACTTTGCATGGTGGCAAGTCACAGGAGCAGAGAGAGATAAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACGCATCGTATTGGACGTACTGGTCGTGCTGGGAAGACCGGTGTTGCTACAACGTTCCTGACTCTTCAGGACTCTGATGTCTTTTATGACCTCAAACAAATGCTTATACAGAGTAATAGTCCTGTCCCTCCTGAATTGGCCAGACATGAGGCTTCAAAATTCAAGCCAGGAACCGTTCCTGATAGACCACCTAGACGAAATGACACTGTATTTACACACTGA 2184 0.4973 MKRPIDDIVVPLASSASSSAAAAPQKPVFLTKAQREELALKRRQEEIAEQRRHQEQLLSRNRPSDPNSDSDRRDRERDRDRDRDRDRDRDRDRDRGRDRERERERDRERERDRARDRDRETERRNREREREEEAKARERARNDKLQEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAADLYDTFDMRVDRHWSEKKLDEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNMKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMTKESEKFFKLKRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTVPDRPPRRNDTVFTH 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1130 727 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 307 335 IPR014014 GO:0003724
Lele37g1130 727 SMART helicmild6 584 665 IPR001650 -
Lele37g1130 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 686 IPR027417 -
Lele37g1130 727 MobiDBLite consensus disorder prediction 1 29 - -
Lele37g1130 727 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 462 470 IPR000629 -
Lele37g1130 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 560 704 IPR001650 -
Lele37g1130 727 Gene3D - 268 537 IPR027417 -
Lele37g1130 727 Coils Coil 30 53 - -
Lele37g1130 727 CDD DEADc_DDX23 318 534 - -
Lele37g1130 727 FunFam probable ATP-dependent RNA helicase DDX23 538 726 - -
Lele37g1130 727 CDD SF2_C_DEAD 545 674 - -
Lele37g1130 727 Pfam Helicase conserved C-terminal domain 559 665 IPR001650 -
Lele37g1130 727 Gene3D - 538 725 IPR027417 -
Lele37g1130 727 MobiDBLite consensus disorder prediction 41 166 - -
Lele37g1130 727 MobiDBLite consensus disorder prediction 702 727 - -
Lele37g1130 727 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 236 704 - -
Lele37g1130 727 Pfam DEAD/DEAH box helicase 332 522 IPR011545 GO:0003676|GO:0005524
Lele37g1130 727 Coils Coil 219 245 - -
Lele37g1130 727 FunFam probable ATP-dependent RNA helicase DDX23 268 537 - -
Lele37g1130 727 MobiDBLite consensus disorder prediction 695 727 - -
Lele37g1130 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 338 533 IPR014001 -
Lele37g1130 727 Coils Coil 97 157 - -
Lele37g1130 727 MobiDBLite consensus disorder prediction 41 170 - -
Lele37g1130 727 MobiDBLite consensus disorder prediction 225 250 - -
Lele37g1130 727 SMART ultradead3 326 548 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1130 Lele-ChrLele37 20914262 20916445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1130 308 701 Eukaryotic Initiation Factors Gene Family AT1G72730 33.165 1.47e-61 210