Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1119 ATGACAGTATGCTGCTTTTGGCTGCAGTCTCTTATTTTGTGCATTGAAATGGCTGTTCCAAAAGTGGACAAAAAGATGCTTGAAGAACTTGAAGCAATGGGATTTCCAAAGGCAAAAGCAACTCGAGCACTCCATTATTCTGGCAATCCTAATGTAAGGGATGCTATAAATTGGATAGTTGATCATGAGAATGATCCAGATATTGATGAGATTCCATTGGTTGATTCAGATATTGAGATTGATTCTTCTCAATCATTCCCTATTACAGAAGAAATGCAAATCAAAGCAGAAAAGCTATGGAAGATTGGTTCTTCTCATTCATCCCCTATTGCAGAAGAATTGCAAATCAAAGAACAGAAGCTAAGGGAAAAGGAGAGAATCCAAGCAGGTAAGAAACTCAATGAGATGAAGCGAATTGCTGAAGAAAATGAAAGGCAACGAAATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAAGTCATACAGAAACTAGAACAGGATAAGATAAACAGAAGGTCTAAACTTGGGTTGCCCCTAGAAGGCCATGCAACCATGAAATCCTCAGCTACAACAGTACAGAAAGAACAAAATCCAAAGCCTGTTTATACTGTTACAAAAGTTGAGCTCTTGAGAGAATGTTTGAGGTCCCTCAAGCGTAACCCCCAGAATGAGCATGCAAGAGTGAGAAGGGCCTTTGAAACACTCTTAATTTATGTTGGAAATGTTGTCAAGAATCCCAACCAGGAAAAATACAGGAAGATCCGATTGAGCAACCCATTATTCCAGGATAGAGTTAGGAGTTTGAATGGAGGTGTGGAATTTCTTGAACTAAGGTTTGAGAGAAAAGGTGACTTTTTGTATCTTCCTGAGGAAAAGGTGGAAATAACATTACTAAATTCAGCTGGATTTGTGTTGAAGTCTGCTATTACAAATCCCTACTTTGGACTTTTTAGTACTCGCACATTGTTATAA 990 0.3859 MTVCCFWLQSLILCIEMAVPKVDKKMLEELEAMGFPKAKATRALHYSGNPNVRDAINWIVDHENDPDIDEIPLVDSDIEIDSSQSFPITEEMQIKAEKLWKIGSSHSSPIAEELQIKEQKLREKERIQAGKKLNEMKRIAEENERQRNIALRKAEKEEEKRAREKVIQKLEQDKINRRSKLGLPLEGHATMKSSATTVQKEQNPKPVYTVTKVELLRECLRSLKRNPQNEHARVRRAFETLLIYVGNVVKNPNQEKYRKIRLSNPLFQDRVRSLNGGVEFLELRFERKGDFLYLPEEKVEITLLNSAGFVLKSAITNPYFGLFSTRTLL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1119 329 CDD UBA_PUB_plant 22 69 - -
Lele37g1119 329 SMART uba_6 23 61 IPR015940 -
Lele37g1119 329 Pfam PUB domain 233 300 IPR018997 -
Lele37g1119 329 PANTHER F13M7.16 PROTEIN 16 322 - -
Lele37g1119 329 Pfam UBA/TS-N domain 23 59 IPR015940 -
Lele37g1119 329 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 21 62 IPR015940 -
Lele37g1119 329 SUPERFAMILY UBA-like 19 73 IPR009060 GO:0005515
Lele37g1119 329 Coils Coil 133 176 - -
Lele37g1119 329 Gene3D - 23 69 - -
Lele37g1119 329 Gene3D - 216 313 - -
Lele37g1119 329 SUPERFAMILY PUG domain-like 207 319 IPR036339 -
Lele37g1119 329 SMART PGNneu 236 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1119 Lele-ChrLele37 20833043 20836228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1119 16 323 C2H2 Transcription Factor Family AT1G04850 53.355 2.45e-89 268