Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1113 ATGAGCACTCAAGCAGTCAGGGGGCCTGCTGTCAGAAGTGGTCGAAGGAGGAAGACAGTTTTGAACTTGGACCTGAACTGTTTCCCACCAAATGAGAATCATGAACAGGGGGGACCTTCAGCTCAATTGGTGCCTCAAGAAGTTCAAGCTGCCCAGCAACCGCCAGTTGCACAACCTGTGATGATTGATGTGGAGGCCATTGAAGATGATGATGTTCTTGAAGCCAGTCCCAGGGCTTTTGCCGAGGCTAAAAGCAATTTGAGAAGAAATCGTAGGAGGACTATAGTTGATGTGGATTTAGAAGAGTGGACGGGAGGAATCAATAATGGTCGCAACAAACGCAGAAGAATTTCCTCAAACCAAACAGTTATTAACTGCGATCTTTATGTAAACCTGGAAGCCAGTAACAGTTCTATGAAGGATAACATAAGAATGCCACCAGAACCGCCAAAGGATCCTGTCTTTAACTGCCCAATTTGTATGGGCCCATTAGTAGAAGAAATGTCAACAAGATGTGGTCATATTTTTTGCAACAATTGCATTAGGGCGGCAATAAAAGTGCAAAGTAAATGCCCCACCTGCAGGAAAAAGGTTACTTTGAAAGAGCTTCGAAGGGTGTTTCTGCCAGCAACTAGTTGA 639 0.4476 MSTQAVRGPAVRSGRRRKTVLNLDLNCFPPNENHEQGGPSAQLVPQEVQAAQQPPVAQPVMIDVEAIEDDDVLEASPRAFAEAKSNLRRNRRRTIVDVDLEEWTGGINNGRNKRRRISSNQTVINCDLYVNLEASNSSMKDNIRMPPEPPKDPVFNCPICMGPLVEEMSTRCGHIFCNNCIRAAIKVQSKCPTCRKKVTLKELRRVFLPATS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1113 212 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 - -
Lele37g1113 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 211 IPR013083 -
Lele37g1113 212 PANTHER ELFLESS, ISOFORM B 2 212 - -
Lele37g1113 212 SUPERFAMILY RING/U-box 156 201 - -
Lele37g1113 212 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Lele37g1113 212 SMART ring_2 157 194 IPR001841 -
Lele37g1113 212 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1113 Lele-ChrLele37 20791179 20795638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1113 1 211 C3H Transcription Factor Family AT5G48655 52.113 3.41e-50 160