Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1110 ATGTTTGTGTCACAAGTACCCACAAGTTACGGCTTGAACCATCATAATTCTCTTGCCCTAGTTGAATTCGATCCTCTCACAGACTCGCAACTCAGTCTAAGAAATCAGAAATCAGATTCAGAGTTCACGGCATCACGATTCAGTCGCGCGGCTTTCTTCTCTTCTTCTCTTTCCAGCAGCTCTCACCCCCAGTCGTTCCTTCATCTCAGATTCATATTCGGAGTCAATGTTCTGGGTGGTCGTTCCGGCTCTCTCGCTCGTCGTTCTGGGTCTCCGCCGTTGATCCTCCTCCTCTACCCACTTAGAAACTTTCTCGCCATTTCCAGTTTGCTTGCTTTCTGGTTCTTGCTCCCTCTCAATCATCTCATACCCTATGCTTATTGTATCGGGATTTGGCAATCTTCTTCTAAAATGCTACCTCCACGTCAGCAATCTCGTGCTGGAGGACTGCAAACTTCACTATCCCTAGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAATATTCGAGAAGCTCCTACTGAAAGTGCTAGTTCACGAGAAACTTGGCCCGCTGCTGAAGCTACTGCAGGAAAGAAGATGGATGATGGGAAGGCTGAGAATGATTGCCCTGAGCGGTCAGTCATCCGTCGTGTTTCTAGTGCTGACAAAATCACTCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTCTTAGAAGAGCTGAAGAACAATCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGATTTCTTCACTTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGCCAAGACATTGATTAGAGCGCATCGCGTGCAGCTTGAAATCCTTGTTGCTATAAATACTGGAATTCAGGCATTTTTGCATCCCAGCGTCAATCTTTCACAAACTTTCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAGCCAGCTTCCTGCTGATGACTGTACCTGTGAAATTTGCACTGGCAGAAATGGTTTCTGCAATCTCTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGGTGTGATTTATGCTCTCATTGGACTCATACAAATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCAGGACCAAGTGAAATGTTTTTCAGGTGCCACGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCGCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGATCCCAGAGGGAGGAAAGTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAAAATGGAATAGTGGATTCAAACGCTGCCTGCAGCGCAGTATTGATATTTTTCCAAGAGCTTGAGGTGGATTCCTTGAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAAATGGAGGTGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCATGGCCCTTGAGGCTTGTGATCGAGAATTAGCAGATAAGGCGAGGGAAGCAGCAGAACTCAAGATGGACAGGCAAAAGAAGAGATTACAGATAGAAGAACTGGAGAGAATTGTAAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTCAAGGCCAATGAGGCTAAACGAGAGGCCGAGAGGCTTCAGAGAATCGCCCTCGCCAAATCGGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGCTTAAGCGAGGCCGAAGCTGAGAAGCAATATCTCTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCGCAGAGTAGTAGTGGAGAACCATCTCAGATGCTTATGTATTCCAAAATCCATGATCTGCTCTATAGTATACCTCCCAAGGCAGATAGTCAACATAATGAGCGACAGCCATTCAGAACAAACCCATGA 2112 0.4484 MFVSQVPTSYGLNHHNSLALVEFDPLTDSQLSLRNQKSDSEFTASRFSRAAFFSSSLSSSSHPQSFLHLRFIFGVNVLGGRSGSLARRSGSPPLILLLYPLRNFLAISSLLAFWFLLPLNHLIPYAYCIGIWQSSSKMLPPRQQSRAGGLQTSLSLVSSDPRLSPEEPRSNSDNIREAPTESASSRETWPAAEATAGKKMDDGKAENDCPERSVIRRVSSADKITLQDIGRERVDIISEKMHHLPEEFLEELKNNLRVILEGGNGSQHREDFFTLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPSVNLSQTFLIEIFVYKRCRNIACQSQLPADDCTCEICTGRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTNCAIRDQLICMGPSAKSGAGPSEMFFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKVFWKCDDLKEKMKNGIVDSNAACSAVLIFFQELEVDSLKSLENGESGRMIAPQEACNRIAEVVQEAIRKMEVVADEKMRMFKKARMALEACDRELADKAREAAELKMDRQKKRLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSSGEPSQMLMYSKIHDLLYSIPPKADSQHNERQPFRTNP 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1110 703 MobiDBLite consensus disorder prediction 684 703 - -
Lele37g1110 703 MobiDBLite consensus disorder prediction 175 189 - -
Lele37g1110 703 Pfam PHD - plant homeodomain finger protein 332 455 IPR032881 -
Lele37g1110 703 MobiDBLite consensus disorder prediction 197 211 - -
Lele37g1110 703 MobiDBLite consensus disorder prediction 156 211 - -
Lele37g1110 703 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 585 605 IPR004082 -
Lele37g1110 703 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 369 389 IPR004082 -
Lele37g1110 703 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 323 344 IPR004082 -
Lele37g1110 703 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 297 312 IPR004082 -
Lele37g1110 703 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 624 646 IPR004082 -
Lele37g1110 703 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 240 262 IPR004082 -
Lele37g1110 703 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 282 297 IPR004082 -
Lele37g1110 703 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 442 461 IPR004082 -
Lele37g1110 703 Pfam Coiled-coil region of Oberon 550 682 IPR032535 -
Lele37g1110 703 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 155 684 IPR004082 -
Lele37g1110 703 Coils Coil 556 625 - -
Lele37g1110 703 SMART PHD_3 362 422 IPR001965 -
Lele37g1110 703 CDD PHD_OBE1_like 362 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1110 Lele-ChrLele37 20777165 20780927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1110 332 434 PHD Gene Family AT5G57380 31.731 7.20e-09 57.0