Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1088 ATGGCGAAGCCGGGAGTGTTGGAATCCGATCCAACGGTGACGGAGAAGGCAATGGAGCTGAAGAAGGAGTTGCAGAGATTGGTAAAGTCAATTGTTGACGATGAAGATCATTACGGCATTGAGACCATTGATACGACGATGGAGACGCTATCGTTGTTGAAGCAGCTGAAGCTCAGCAAGAGATCGACGACGACGACGTCGTCTTCTTCGTCACTGTCTTTGACGCTTCGCCATAAAACCGGCTTGAATTGCCCCGAAGAATTCAAATGCCCTCTTTCCAAGCAATTGATGAGAGATCCTGTCATAGTGGCTTCTGGTCAGACATATGACAGAACGTTCATTCAAAAGTGGCTGCAAGCCGGGAACCGGACATGCCCTCGGACACAGCAAGTTCTCTCGCACACTGTTCTCACTCCGAATTACCTAATAATGGAAATGATTGAGAAATGGTGTGGAAGCCAAGGGATTGAATTTTCCAACCATGTTCACTTTATCAATGAGGAAGCTATCATAGAACTAGGCCACGGTCATTTTCTTTCTTTGATTGATAAAGTGTCTTCATCAGCACTTTCCGAACAGAAAGCCGCCGCGCAGGAGCTCCGGATTCTGACAAAGAAAATGCCTTGTTTCCGGGTATTTTTTGGCGAGTTTTCGGGTGCCATTCCCAAATTGCTTAAACCAATCTGTGGTAGTCACTCTCTGGGTAATGTTCACCCTGACCTCCAAGTGTTAGAAAAATAA 741 0.4629 MAKPGVLESDPTVTEKAMELKKELQRLVKSIVDDEDHYGIETIDTTMETLSLLKQLKLSKRSTTTTSSSSSLSLTLRHKTGLNCPEEFKCPLSKQLMRDPVIVASGQTYDRTFIQKWLQAGNRTCPRTQQVLSHTVLTPNYLIMEMIEKWCGSQGIEFSNHVHFINEEAIIELGHGHFLSLIDKVSSSALSEQKAAAQELRILTKKMPCFRVFFGEFSGAIPKLLKPICGSHSLGNVHPDLQVLEK 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1088 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 157 IPR013083 -
Lele37g1088 246 ProSiteProfiles U-box domain profile. 83 157 IPR003613 GO:0004842|GO:0016567
Lele37g1088 246 SMART Ubox_2 87 150 IPR003613 GO:0004842|GO:0016567
Lele37g1088 246 FunFam RING-type E3 ubiquitin transferase 83 157 - -
Lele37g1088 246 PANTHER U BOX DOMAIN-CONTAINING 20 242 - -
Lele37g1088 246 Pfam U-box domain 85 153 IPR003613 GO:0004842|GO:0016567
Lele37g1088 246 CDD RING-Ubox_PUB 88 130 IPR045210 -
Lele37g1088 246 SUPERFAMILY RING/U-box 82 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1088 Lele-ChrLele37 20588666 20592451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1088 6 226 U-box Gene Family AT3G54850 36.170 7.76e-37 135