Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0998 ATGGCGTATGTTAAGGCTCAAAAAAAAAGGGCGTACTTCAAGAGATATCAAGTCAAGTTTAAGAGAAGAAGAGAGGGAAAAACTGATTACCGAGCTAGGATTCGGTTGATCAATCAGGACAAGAACAAGTACAACACTCCCAAATATCGCTTTGTCGTGCGATTTACTAACAAAGATATTATTGCACAAATAACATCCGCTAGTATTGCTGGTGATATTGTCCTTGCTGCTGCATATGCACATGAGTTGCCAGGTTATGGCCTCAAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGTCTTCTTTTGGCTCGTCGAGTCCTTAAGATGCTCGAGATGGAAGAGGAGTATGAGGGCAATGTAGAGGCTTCAGGAGAGGACTTTTCTGTTGAACCTTCTGATACTCGGAGGCCTTTCCGTGCTCTACTTGATGTTGGTCTTATTAGGACTACAACTGGCAACCGTGTCTTTGGTGCCCTGAAGGGAGCATTGGATGGGGGATTAGATATTCCTCACAGCGACAAAAGGTTTGCTGGTTTTAATAAGGATAAGAAAGAGCTTGATCCTGAGACTTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATATCTCAAGCGAGGATTAGAGGCTGATGGACTAGAGGAGATGTACAAAAAGGTTCATGCTGCCATTCGTGCCAACCCCACCGTGAAGAAGTCTGAGAAAGAGCAACCAAAGGAACACAAGAGGTACAACCTGAAGAAACTTACATACGAGGAGAGGAAGGCTAAGTTGGTTTCGCGTTTGCAGGCTCTCAACTCTGCGGCTGATGGTGCTGACGAGGATGAGGATGATGAGTAA 858 0.4476 MAYVKAQKKRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLAAAYAHELPGYGLKVGLTNYAAAYCTGLLLARRVLKMLEMEEEYEGNVEASGEDFSVEPSDTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKDKKELDPETLAEDEPEKYQSHFSEYLKRGLEADGLEEMYKKVHAAIRANPTVKKSEKEQPKEHKRYNLKKLTYEERKAKLVSRLQALNSAADGADEDEDDE 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0998 285 Hamap 50S ribosomal protein L18 [rplR]. 14 230 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele37g0998 285 MobiDBLite consensus disorder prediction 233 253 - -
Lele37g0998 285 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele37g0998 285 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele37g0998 285 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele37g0998 285 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele37g0998 285 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele37g0998 285 Gene3D - 1 275 - -
Lele37g0998 285 FunFam 60S ribosomal protein L5 1 275 - -
Lele37g0998 285 CDD Ribosomal_L18_L5e 41 170 - -
Lele37g0998 285 SUPERFAMILY Translational machinery components 11 236 - -
Lele37g0998 285 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 274 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele37g0998 285 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele37g0998 285 Pfam Ribosomal L18 C-terminal region 219 272 IPR025607 -
Lele37g0998 285 MobiDBLite consensus disorder prediction 234 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0998 Lele-ChrLele37 19853369 19856320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0998 1 275 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 78.007 1.64e-168 467