LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele37g0966	ATGCTCCGGGGAGTGGATGTAAATTTAGCGCCGCCGCCGTCAACAACGGTGGTGGACTGTGACGACGAAAATGGCGTCTCATCACCGAACAGTACTGTGTCGAGCATCAGTGGAAAGCGGAGCGAGAGGGAGTCTATTGGCGGCGAGCATGAAGCCGAGCGTGCGTCATGTTCTCGAGGGAGCGATGACGACGATGATGATGGCGGCGGCGACGTCGACGGCGGCAGAGAGGGAGACGGAGACGGCGATACCTCGAGGAAGAAGCTCCGGCTGGCGAAGGAACAAGCGGTTGTGCTTGAGGAAACGTTCAAGGAGCACAATACCCTCAATCCGGTAAGCACCAGTGGCATTTCTGTAAATTCAAGACAAGTAAGGAAGCAAAAACAGGAATTGGCAAAACGGCTGAATCTGAGGCCGAGACAAGTGGAAGTGTGGTTTCAGAACAGGAGGGCAAGGACCAAGCTGAAGCAAACGGAAGTGGATTGTGAGTATTTGAGGAGATGTTGTGATACCTTAACTGAAGAGAATAGGAGGCTGCAAAAGGAAGTTCAAGAGCTTAGGGCACTAAAACTTTCCCCACACTTCTACATGCACATGAATCCTCCCACCACTCTCACAATGTGCCCTTCCTGCGAGCGCGTTGCAGGCGCCGGAACTCCTCCGGCCCCATCGAGCTCTAGCATTCAGAGGCCGGTGCCCCTCCTCCCTTGGGCGGTGGCTAACTCGAATCGGAACCGCCCGACCGACAGCTTAAATCCCCGCCCGTAA	768	0.5508	MLRGVDVNLAPPPSTTVVDCDDENGVSSPNSTVSSISGKRSERESIGGEHEAERASCSRGSDDDDDDGGGDVDGGREGDGDGDTSRKKLRLAKEQAVVLEETFKEHNTLNPVSTSGISVNSRQVRKQKQELAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCDTLTEENRRLQKEVQELRALKLSPHFYMHMNPPTTLTMCPSCERVAGAGTPPAPSSSSIQRPVPLLPWAVANSNRNRPTDSLNPRP	255

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele37g0966	255	SMART	halz	156	199	IPR003106	GO:0006355\|GO:0043565
	Lele37g0966	255	MobiDBLite	consensus disorder prediction	20	41	-	-
	Lele37g0966	255	Pfam	Homeobox associated leucine zipper	156	190	IPR003106	GO:0006355\|GO:0043565
	Lele37g0966	255	ProSitePatterns	'Homeobox' domain signature.	131	154	IPR017970	GO:0000981\|GO:0006355
	Lele37g0966	255	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	21	225	-	-
	Lele37g0966	255	SUPERFAMILY	Homeodomain-like	72	157	IPR009057	-
	Lele37g0966	255	MobiDBLite	consensus disorder prediction	1	87	-	-
	Lele37g0966	255	ProSiteProfiles	'Homeobox' domain profile.	82	156	IPR001356	GO:0003677
	Lele37g0966	255	Pfam	Homeodomain	86	154	IPR001356	GO:0003677
	Lele37g0966	255	Pfam	HD-ZIP protein N terminus	1	44	IPR006712	GO:0005634
	Lele37g0966	255	MobiDBLite	consensus disorder prediction	73	87	-	-
	Lele37g0966	255	MobiDBLite	consensus disorder prediction	42	63	-	-
	Lele37g0966	255	CDD	homeodomain	86	157	IPR001356	GO:0003677
	Lele37g0966	255	Gene3D	-	90	154	-	-
	Lele37g0966	255	SMART	HOX_1	84	160	IPR001356	GO:0003677
	Lele37g0966	255	Coils	Coil	169	192	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele37g0966	Lele-ChrLele37	19475686	19477012	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele37g0966	1	248	Homeobox Transcription Factor Family	AT3G60390	60.837	9.00e-93	274

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele37g0966		HD-ZIP_N	4.1e-17	No_clan