Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0934 ATGATGAACCCTAATTTTGAATCAATTCAACAGTACCTGATTGAAGAAGATCCTTCCTCCATGACTCTCTTGAATAGCTTCTTCATCACGGACAACCCTACTTGGAATCTGAACTATGTTATTGACACTGCTTTGCCGGAGCGGGGGGTTAGTAACTCCGGAGGTATGGTGTTTTCCGGTGGGAATGACGACAAGTACGCTATGAATCCAGGGGGTTGTTATGGCGATAGGCTTAATGGTGGTAATAGCAACACAGGATCTGTGGTGGCGTGTGAAAAGAAAGCGCCACCTAGATGGAGGAATTACCGAGGTGTGAGGAGGCGGCCATGGGGGAAGTTCGCGGCTGAAATTCGGGACCCAAAGAGGAATGGCGCGAGGACATGGCTGGGAACCTATGAGACGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAAAGGTAGAAAAGCCAAGGTCAATTTTCCACACCTCATTGGATCGGAACCACTGCCGGAGCTTGCAAGAGTAGTCGCCGGACAGAAACAGCGACGCCCTCTGGAAGAAAAGCCCCCAGGTCTACCGAATAAGTTAGAAATCGTGTGA 594 0.4949 MMNPNFESIQQYLIEEDPSSMTLLNSFFITDNPTWNLNYVIDTALPERGVSNSGGMVFSGGNDDKYAMNPGGCYGDRLNGGNSNTGSVVACEKKAPPRWRNYRGVRRRPWGKFAAEIRDPKRNGARTWLGTYETEEDAALAYDRAAFKMKGRKAKVNFPHLIGSEPLPELARVVAGQKQRRPLEEKPPGLPNKLEIV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0934 197 CDD AP2 101 161 IPR001471 GO:0003700|GO:0006355
Lele37g0934 197 MobiDBLite consensus disorder prediction 177 197 - -
Lele37g0934 197 PRINTS Ethylene responsive element binding protein signature 141 161 IPR001471 GO:0003700|GO:0006355
Lele37g0934 197 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Lele37g0934 197 ProSiteProfiles AP2/ERF domain profile. 101 159 IPR001471 GO:0003700|GO:0006355
Lele37g0934 197 Pfam AP2 domain 101 151 IPR001471 GO:0003700|GO:0006355
Lele37g0934 197 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Lele37g0934 197 PANTHER DNA-BINDING DOMAIN 88 171 IPR044808 GO:0003700|GO:0009873
Lele37g0934 197 SMART rav1_2 101 165 IPR001471 GO:0003700|GO:0006355
Lele37g0934 197 FunFam Ethylene-responsive transcription factor 2 100 160 - -
Lele37g0934 197 SUPERFAMILY DNA-binding domain 101 160 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0934 Lele-ChrLele37 19206839 19207432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0934 102 164 AP2-EREBP Transcription Factor Family AT2G44840 85.714 2.89e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele37g0934 AP2 1.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0934 37 19206839 19207432 Lele37g0934 37 19206839 19207432 ECH
Lele37g0934 37 19206839 19207432 Lele39g0471 39 3779788 3780414 hybridization
Lele37g0934 37 19206839 19207432 Lele40g0820 40 18640363 18641055 hybridization