Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0878 ATGGCTTCTCCGCCAATTTACACCCTAAACGTCGTCGGATCAGACCCTACCTCCTTCACCGAGACTTCTACTTCCGAGGATCGTGTTTCTTCTCATTCAGCTTTTCAGAATCTCAACACCAGTGTTCTGATTATTGTTATCGTCCTCGCCGTTACTGTCATTGTGTCGCTCTCTCTCTGTTTCATCCTTCGTCACCTCAATCTCCCGTGTCTCCGTCGGCTGTCTCCGTCGTCGTTGTTCAGGAGGAATGCCGCGCCTGCCACTGCTACTACGATGCCTGGTTACTCTTCCAGTCGTCGCGTCTCGCCGGAGATTCCCTCGGCTTCCATTACTGACTCGCTTCCGATGTTCACGTTTTCTTCTATTACTCGCCGCTCTTCTGACTCTGATACTACCGGCGGAGATTGTGCGGTTTGCCTCTCGAAATTTGAGCAGAGAGACCTCCTCCGTCTTCTCCCGTTGTGTTGTCATGCGTTCCATGTGGAATGCATAGACACTTGGCTTCAGGCGAATTTGACTTGTCCGTTGTGCCGATCTGCGATTTTTGCCTCTGATTCGGACTTAATAAAGGTTCTTCGATCGTCTTCGGGCGGAGGTGGAGGCAGCGATAGTTTCCGGCTTGAAATCGGAAACATCAGCCGGCGGGGAACGGCACCACCAGACGTCGCTGGAGACGCTCGTGCGAGGTCGAGTTCGAGGTCCTATTCCGTTGGCTCGTTCGAGTATTTTGTAGAGGAGGATTTCGAGGTTCCTATCAGCCACGCGCATCGGAGGAGCGCATCGGATAACAAGGATGAATCGGTAGTTGCAGAGTCTGAGCCACCGGCGACGGCTCAGTCATTCTATGAGGCAAGCTTAGCCGCCGATGTAGCCGGCAGCGGGAGGAGCTGGCTGAAGGAATACGTGGACAGGCTCTCATCTTCTATATCATCTCGAACAGTATCATTTCGAGGCTCTGGAAGGTTCTTTACAGGCGGTAATGCTAGCCACCGAAGCGACGCCGCGGTCTCAGCCGAGGACTGCGACATTGAAGCAATAAGATTGGGCGAAGAAATTAGCGAAACTTTTCGATGGCTCTCAGGGGTATGA 1089 0.5289 MASPPIYTLNVVGSDPTSFTETSTSEDRVSSHSAFQNLNTSVLIIVIVLAVTVIVSLSLCFILRHLNLPCLRRLSPSSLFRRNAAPATATTMPGYSSSRRVSPEIPSASITDSLPMFTFSSITRRSSDSDTTGGDCAVCLSKFEQRDLLRLLPLCCHAFHVECIDTWLQANLTCPLCRSAIFASDSDLIKVLRSSSGGGGGSDSFRLEIGNISRRGTAPPDVAGDARARSSSRSYSVGSFEYFVEEDFEVPISHAHRRSASDNKDESVVAESEPPATAQSFYEASLAADVAGSGRSWLKEYVDRLSSSISSRTVSFRGSGRFFTGGNASHRSDAAVSAEDCDIEAIRLGEEISETFRWLSGV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0878 362 CDD RING-H2_PA-TM-RING 135 178 - -
Lele37g0878 362 Pfam Ring finger domain 135 178 IPR001841 -
Lele37g0878 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 36 266 - -
Lele37g0878 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 182 IPR013083 -
Lele37g0878 362 FunFam E3 ubiquitin-protein ligase ATL6 96 184 - -
Lele37g0878 362 MobiDBLite consensus disorder prediction 256 276 - -
Lele37g0878 362 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Lele37g0878 362 SUPERFAMILY RING/U-box 114 183 - -
Lele37g0878 362 SMART ring_2 136 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0878 Lele-ChrLele37 18584404 18585492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0878 109 189 C3H Transcription Factor Family AT5G05810 50.617 1.59e-20 90.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0878 37 18584404 18585492 Lele39g0533 39 4657591 4658898 hybridization
Lele37g0878 37 18584404 18585492 Lele40g0754 40 17787782 17790020 hybridization