Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0831 ATGAACTATCAACAGAGGCTCCAAGTTGCGGCGAAAATCATTCTTGAACATGACGCATGCGACGCCGACGCGCCGCTTAACGTCCAAGAGCTTGGGATCAAGGCGACCCTTAAACCTCACCAAGTGGAGGGTGTTTCGTGGCTCATACGAAGATATAAACTTGGCGTCAACGTTCTCCTCGGGGATGAGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGCCAGTTGTCAGTTGGACCATCTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGTTGGGTTTCAGAGATTGTTAAATTTTCACCCCAACTAAAAGTAATCAAATATGTTGGAGGGAAAGAAGACAGGTGCTGCCTACGCAGGAATATTCATGAACATGTACAGGGACAGTCAACAGCAGTCAATGTCTTGTTACCTTTTGACGTCCTATTAACAACTTATGATATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATATAATGTTCTCAAAGAGAGCTATGTCATGCCAAGACGGTTGTTGATGACTGGTACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTATCTTTGGTACACTAGAGCAGTTCCTTTCCACATTCAAGGACATCAGTGATCCTACATCAGTTCAAAATGCTATGAAGGTAAAGGAGCAACTTAAGATACTGAAAAGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCATGCTACCATCTCTCACTGAGATAACTGTTATGGCACCCCTAGTTGGCCTGCAAAAAAAGGTTTACATGTCAATTTTGAGGAAGGAGCTTCCTAAGTTACTCGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATCCAGCTAAGGAAAGCATGTAGTCATCCTTATCTTTTCCCGGGTATTGAGCCTGAGCCTTATGAAGAGGGTGAACATCTGGTTCAGGCCAGTGGGAAATTGTTGATCCTGGACCAGCTTCTTCAGAAGTTACATTATTCTGGACATCGTGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATATTGCAGGACTTTCTGGAGTTAAGAAAATATTCCTATGTTCGTCTTGATGGGTCAATTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGTGGCCCATCAGCTAATTCAGTTTTGAATTCTGAAGCAGACCAAAATGGAGCCTTTGTCTTCTTGATCACAACAAGAGCTGGGGGAGTCGGATTGAATCTTGTGGCTGCTGATTCGGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAGCAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTATTGTGCATAAACCTTGTTACAGAAAAAACAGCAGAGGAGGTAATCATGCGGAGGGCAGAGAAGAAATTGCAGCTTAGCCTCAATGTTATAGGTGATAATATTCAGGAACATGAAGATGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCGTCATGTTTGGCCTACATATGTTTGATCCTACTGAAAATAATGATGGAGAGCTTGGGGACTTAGATTTGTCAGAAATTAATGCTATGACTGACAAGGTGATAGCAATGCGTGATGTACATGCATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTGGAAATCTTCTAGAATCATATGACGCTAAGGAAGGAGCTTCTACTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTCGAGGAACTGTCAAAATTAAGTGGTGACTCAATCATGGAGATGAGGAATAGAGGAATCTTGGATGAGGAAAAGCGTCTAAAACTTGAGGCTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGTCTAAGTGGGAAGCCCTTGGATACCATTCATTGAATGTGAATGACCCTATCATCCCTCCAGATGGTGGTAATCCATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGTACAGATCCATTGAACGTTTGTCCATCTGAACCTGCCATAATATTCAGCTGTGTTGATGCCTCTGGAAACTGGGGCCGTGGAGGAATGTTTAATGCACTTAACAAGCTTTCTTTGAGCATTGGTGATGCCTATGAAAGGGCTTCTGCACATGGGGACTTGCATCTTGGGGACCTACATCTTATAAAGCTTGAAGATGACTGCGATGAACAAAATATGGATACAACTACTCCCATTTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTTCCTCGGAGTTCGATCTCACTTCCCCACTTGGAGAGTTGCTTATCCAAAGCAGCATTTTCAGCCAAGCAAAATTCTGCATCAATACACATGCCCCGTATAGGTTATCAGGATGGATCAGATCGTTCTGAGTGGTACGCCATCGAGCGTCTTCTACGAAAATATGCTTCCATTTATGGCACCAGCATATATATACTATTATCGTCGACAATCTCAGTAAAGCTTATGATTGATTCAAGTATCAAAGAAGATAGTTGTTGGGAATCATGCTCTGCCTCCAATAATGTATATATTCTTCTCACTTTCTTGAGTGAAACTACTAGCGAGGATGACGAAATGGACAAAGATGATAAACCAAAATCATCCGCCAGATCGAAAACAGCCAAAGTCATGGCTAGGCTTATCAATTACAAACCTTGGTCAAATGAGCTGGCATCCTCTTTATCTTCACTTTGCCCCACTCTGTCGAAAACCATGGTGCTTCAAACTCTTCGTCTTATCTCAAATTCATCCAAAGCCTTTCAATTCTTTAAGTGGGTACACGATATGGGTTTCCCACACAATGACCGATCATACTTCATAATGATAGAAATTTTGGGCCGTGGAAGAAACCTTAATGTAGCTCGGAATTTTTTGTTTTCAATTGAGCTAAGATCCAATGGTGCTGTTAAGCTTAATGATCAGTTCTTTAATGGCTTAATTAGGAGTTATGGTCAAGCTGGGTTGTTTGAAGAGTCGACGAAGCTTTTTCAGACTATGAAGACAATGGGTGTTTCACCATCTGAGATCACATTCAACAGTCTTTTTTCTATATTGCTTAGACGGGGTCGGACGAATATGGCAAACGATCTTTATGATGAAATACTCAGGACGTATGGAGTTGCACCAGACACGTATACATATAATATTTTGATCAGAGGGTTTTGTAAGAACTCCATGGTTGATCAAGGGTTTCGATTTTTCAATGAAATGTCACGCTTCAATTGTGATCCAGATATTGTTACATATAATACACTTGTTGATGGCTTGTGTAAAGCAGGGAAGGTCAAAATCGCACATAATTTAGTGAAGGGTATGAGTAAGAAAAGCAACGATTTGAATCCTAATGTTGTGACTTATACAACTTTAATTAGAGGGTATTGTATGAAACAAGAATTAGATGAGGCCTTGCTTATAATTAAGGAGATGACTACTCAAGGGCTCAAGCTAAACAAAATTACCTACAACACTCTGATAAAAGGACTTTGTGAGGCCCGCAAATTAGATAAGATCAAAGATATTTTGGAACAAACCATAGGGGATGGTCAATTCAGTCCAGACACATGTACCTTCAACACATTAATTCATGCACATAGCAGTGCAGGAAACTTAGATGAGGCATTAAAGGTGTTTGAGGGGATGAAAAACTTGCAGGTCCCCGCAGACTCTGCCACATACAGCGTTCTGCTATGGAGCCTGTGTGCAAGAGAGGACTATGATATGGCAGAAAAGATGTTTGATGAGTTGTATGAGAAGGAAATTTTGTTGAGTAATTTTGGCTCTAAGCCTCTTACTGCTTCGTACAACCCTATGTTTCAGTATCTTTGTGAACACGGGAAAACTAAGAAGGCTGAGAGAGTATTTAGACAGCTAATGAAAAGGGGAACACAAGACCCTCCGTCCTACAAGACAATGGTTATGGGGCACTGTAAGGAAGGTTCTTATGAAGACGGATATGAGCTTTTGAAGTGGATGTTAAGACAAAATTTTCTTCCAGATGTTGAGATATATGATTCTTTGATTCATGGTTTTCTTCAGAAGGAGAAACCTCTTCTTGCAAAAGAGGCACTAGAGAAAATGCTAAGGAGCTCCTATCTTCCCGAAACATTTACTTGGCACTCTATACTGGCAAAGCTTTTGGAAAAAGTTTGTGCCCATGAATCTGCCAGTTTTATAGTCATGATGCTAGATAAAAATATTAGACAAAACATAAAATCTTCAACCATGAGTTTACGGCTACTTTTTGGCCATGGACTGAAGTACAGAGCATTTGAGGTTTTAGAGTTGCTTTACAGGCATGGATACTGTGTTAAAATAGATGAACTAGTTCAGTTTCTTATACACAGAGGAAAGCTATCAGAGGCATGCAAAATGTTGGCATTCTGTTTTGAAAATCATGAAAATGTTGATCTTGATTTGTGCAATGTTGTTATTTTGGGCTTTGTAAAAGGAACTAGGTTTCAGAAGCTTTTGGTTTATGCCATAGAAGCCAAATCTGTTGCTTATGTTATTGCTGAAAGGGCATGTCTGATGTGA 4710 0.4042 MNYQQRLQVAAKIILEHDACDADAPLNVQELGIKATLKPHQVEGVSWLIRRYKLGVNVLLGDEMGLGKTLQAISLLSYLKECQLSVGPSLVLCPLSVTDGWVSEIVKFSPQLKVIKYVGGKEDRCCLRRNIHEHVQGQSTAVNVLLPFDVLLTTYDIALIDQDFLSQIPWQYAIIDEAQRLKNPSSVLYNVLKESYVMPRRLLMTGTPIQNNLSELWALMYFCMPSIFGTLEQFLSTFKDISDPTSVQNAMKVKEQLKILKSILGAFMLRRTKSKLIESGTLMLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDFLELRKYSYVRLDGSIRAEERFAAIRSFSGPSANSVLNSEADQNGAFVFLITTRAGGVGLNLVAADSVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTAEEVIMRRAEKKLQLSLNVIGDNIQEHEDEQKSGVGTGDLKSVMFGLHMFDPTENNDGELGDLDLSEINAMTDKVIAMRDVHASDKDDRKFEINPGNLLESYDAKEGASTSFNSDPSLDEASYLSWVKKFEELSKLSGDSIMEMRNRGILDEEKRLKLEAAKKKAEEKKLSKWEALGYHSLNVNDPIIPPDGGNPSDAGSVHFVYGDCTDPLNVCPSEPAIIFSCVDASGNWGRGGMFNALNKLSLSIGDAYERASAHGDLHLGDLHLIKLEDDCDEQNMDTTTPIWVALAVVQSYNPRRKVPRSSISLPHLESCLSKAAFSAKQNSASIHMPRIGYQDGSDRSEWYAIERLLRKYASIYGTSIYILLSSTISVKLMIDSSIKEDSCWESCSASNNVYILLTFLSETTSEDDEMDKDDKPKSSARSKTAKVMARLINYKPWSNELASSLSSLCPTLSKTMVLQTLRLISNSSKAFQFFKWVHDMGFPHNDRSYFIMIEILGRGRNLNVARNFLFSIELRSNGAVKLNDQFFNGLIRSYGQAGLFEESTKLFQTMKTMGVSPSEITFNSLFSILLRRGRTNMANDLYDEILRTYGVAPDTYTYNILIRGFCKNSMVDQGFRFFNEMSRFNCDPDIVTYNTLVDGLCKAGKVKIAHNLVKGMSKKSNDLNPNVVTYTTLIRGYCMKQELDEALLIIKEMTTQGLKLNKITYNTLIKGLCEARKLDKIKDILEQTIGDGQFSPDTCTFNTLIHAHSSAGNLDEALKVFEGMKNLQVPADSATYSVLLWSLCAREDYDMAEKMFDELYEKEILLSNFGSKPLTASYNPMFQYLCEHGKTKKAERVFRQLMKRGTQDPPSYKTMVMGHCKEGSYEDGYELLKWMLRQNFLPDVEIYDSLIHGFLQKEKPLLAKEALEKMLRSSYLPETFTWHSILAKLLEKVCAHESASFIVMMLDKNIRQNIKSSTMSLRLLFGHGLKYRAFEVLELLYRHGYCVKIDELVQFLIHRGKLSEACKMLAFCFENHENVDLDLCNVVILGFVKGTRFQKLLVYAIEAKSVAYVIAERACLM 1569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1209 1243 IPR002885 -
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1066 1101 IPR002885 -
Lele37g0831 1569 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 24 613 IPR031053 GO:0003678|GO:0006281|GO:0006338
Lele37g0831 1569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 226 IPR014001 -
Lele37g0831 1569 SMART helicmild6 394 489 IPR001650 -
Lele37g0831 1569 Pfam PPR repeat 1035 1063 IPR002885 -
Lele37g0831 1569 Pfam PPR repeat 1325 1353 IPR002885 -
Lele37g0831 1569 Pfam PPR repeat 1359 1386 IPR002885 -
Lele37g0831 1569 Pfam PPR repeat 1394 1421 IPR002885 -
Lele37g0831 1569 Pfam PPR repeat 1068 1094 IPR002885 -
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1137 1171 IPR002885 -
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1102 1136 IPR002885 -
Lele37g0831 1569 FunFam Putative helicase CHR10 282 593 - -
Lele37g0831 1569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 536 IPR027417 -
Lele37g0831 1569 SUPERFAMILY Macro domain-like 705 870 IPR043472 -
Lele37g0831 1569 CDD Macro_Poa1p-like_SNF2 704 864 - -
Lele37g0831 1569 CDD SF2_C_SNF 357 500 - -
Lele37g0831 1569 Pfam SNF2-related domain 55 344 IPR000330 GO:0005524|GO:0140658
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1245 1279 IPR002885 -
Lele37g0831 1569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 539 IPR001650 -
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1356 1390 IPR002885 -
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1174 1208 IPR002885 -
Lele37g0831 1569 Gene3D Tetratricopeptide repeat domain 1313 1449 IPR011990 GO:0005515
Lele37g0831 1569 Gene3D Tetratricopeptide repeat domain 1093 1164 IPR011990 GO:0005515
Lele37g0831 1569 Gene3D Tetratricopeptide repeat domain 930 1092 IPR011990 GO:0005515
Lele37g0831 1569 Gene3D Tetratricopeptide repeat domain 1165 1237 IPR011990 GO:0005515
Lele37g0831 1569 Gene3D Tetratricopeptide repeat domain 1238 1312 IPR011990 GO:0005515
Lele37g0831 1569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 271 IPR027417 -
Lele37g0831 1569 Gene3D - 15 283 IPR038718 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1359 1392 IPR002885 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1176 1209 IPR002885 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1139 1167 IPR002885 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1035 1067 IPR002885 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1211 1235 IPR002885 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1068 1103 IPR002885 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1247 1275 IPR002885 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1325 1353 IPR002885 -
Lele37g0831 1569 TIGRFAM PPR: pentatricopeptide repeat domain 1104 1138 IPR002885 -
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1391 1425 IPR002885 -
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1280 1314 IPR002885 -
Lele37g0831 1569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1031 1065 IPR002885 -
Lele37g0831 1569 Gene3D - 284 589 IPR027417 -
Lele37g0831 1569 Pfam Helicase conserved C-terminal domain 365 489 IPR001650 -
Lele37g0831 1569 SUPERFAMILY HCP-like 1244 1420 - -
Lele37g0831 1569 Gene3D Leucine Aminopeptidase, subunit E, domain 1 701 871 IPR043472 -
Lele37g0831 1569 SMART ultradead3 33 234 IPR014001 -
Lele37g0831 1569 Pfam PPR repeat family 1173 1221 IPR002885 -
Lele37g0831 1569 Pfam PPR repeat family 1244 1292 IPR002885 -
Lele37g0831 1569 Pfam PPR repeat family 1101 1150 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0831 Lele-ChrLele37 17988918 18009221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0831 1231 1514 Glycosyltransferase AT1G05670 24.092 2.33e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele37g0831 SNF2_N 2.3e-49 CL0023