Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0802 ATGAGCTTCTGCGTTCCCACCTGGGATGTTGACAACAGCAATATTCCCTCTGCCAACAGAACCTCTCTTCCTTCTAACTCCAACTCCACCGTCCCTGATCTCATCCCCACGTTTGACTATGAAGTTGCAGAGCTTACATGGCAGAACGGGCAGATATGGATGAACGGAATGGGTCTTCCACGATCTCCGGCGAAACATATGACTTCTGGTGTGGCGGCGAGTACGATGTCCGATCCATTGACGACGGCCACTACCCATTCGAAGTATCGTGCTAGTGGAACCTTAGAGTCTATAGTCAATCAGGCTACTAGGTTCTCCCAGAACACCAAATTAATGTCACAAAGCGTTGACGGTGACGGAGACAAGTTAGTAGTTCCATGGTTTGAACACCAACGTCGCGGCGACGGCAGCGGCGGTGCTGGCGCTGCTGTATCGAACACAATGACTATGGATGCTTTGGTGCCTTGCTCTAATCGTACGGACGAGCAGAGTACGGCGGTTGTGGATGAATCCATGGGTGGTGGAGGGATTAGCACGCGTGGCGGCAGAATGGGTGGTTGCTCGGCCCGTGTGGGTTCTTGCGGTGGTGCTGCGAGAGTCCCGGGGGTGGCGCGTGTGCCTGTAGCCCGCCAGTGGGATCAAAGTTTGAGTGAGAGAGACAGCCATCACGTGAGCCCTGACACGTGCGATAGGGAAATGGATGGGGGTTATACTTCTGCTTCAATGGGTTCGCCGGAAAACACCAGCTCTATCCAGCCGTGCACGAAGATGACCGCCGCTGACGACCATGATTCTGTTTGCCACAGTACACAGAGAGAAGAAGATGAAGAGGAGGAGAAAAAAGAAAGAACAGGAAAATCTTCTTCATCCAACAAACGGCGTAGAGCTGCTGATGTGCACAATCAATCTGAAAGAAAAAGGCGAGATAAGATAAACCAAAGGATGAAGACATTGCAGAAGCTGGTTCCAAATTCCAGCAAGATTGATAAAGCTTCAATGCTCGATGAGGTAATAGATTATGTGAAGCAACTTCAAGCACAAGTTCAAATGATAAATAGAATGAGTCTGTCTTCCATGATGTTGCCAATGACCCTGCAACAGCAGCAACTTCAACTCATGTCCATGATGGCTCCAATGGGGATGGGATTAGGTATGGATATGAACACTATGGCTCGCCCTAACATACCCACCGTCCCTCCGATTCTCCACCCTTCCGCCGCCGGCTTCATGCCAATGGCTGCCTCATGGGACGCTTCTACTGGCGGCAATCGGCTTCAAGGAGCAGTGCCCGACTTCTTATCTTCATTCCTAGCATGCCAGCCCATGAACATGGATGCATACAGTAGGATGGCTGCTATGTATCAGCAAATGCAGCAAGCTCCAGCATCAAGTTCCAAGAACTGA 1404 0.5078 MSFCVPTWDVDNSNIPSANRTSLPSNSNSTVPDLIPTFDYEVAELTWQNGQIWMNGMGLPRSPAKHMTSGVAASTMSDPLTTATTHSKYRASGTLESIVNQATRFSQNTKLMSQSVDGDGDKLVVPWFEHQRRGDGSGGAGAAVSNTMTMDALVPCSNRTDEQSTAVVDESMGGGGISTRGGRMGGCSARVGSCGGAARVPGVARVPVARQWDQSLSERDSHHVSPDTCDREMDGGYTSASMGSPENTSSIQPCTKMTAADDHDSVCHSTQREEDEEEEKKERTGKSSSSNKRRRAADVHNQSERKRRDKINQRMKTLQKLVPNSSKIDKASMLDEVIDYVKQLQAQVQMINRMSLSSMMLPMTLQQQQLQLMSMMAPMGMGLGMDMNTMARPNIPTVPPILHPSAAGFMPMAASWDASTGGNRLQGAVPDFLSSFLACQPMNMDAYSRMAAMYQQMQQAPASSSKN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0802 467 MobiDBLite consensus disorder prediction 215 230 - -
Lele37g0802 467 Pfam Helix-loop-helix DNA-binding domain 300 345 IPR011598 GO:0046983
Lele37g0802 467 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 466 IPR031066 -
Lele37g0802 467 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 353 IPR036638 GO:0046983
Lele37g0802 467 MobiDBLite consensus disorder prediction 240 256 - -
Lele37g0802 467 MobiDBLite consensus disorder prediction 261 312 - -
Lele37g0802 467 MobiDBLite consensus disorder prediction 212 312 - -
Lele37g0802 467 CDD bHLH_AtPIF_like 295 360 - -
Lele37g0802 467 Coils Coil 301 321 - -
Lele37g0802 467 Gene3D - 290 355 IPR036638 GO:0046983
Lele37g0802 467 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Lele37g0802 467 SMART finulus 301 350 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0802 Lele-ChrLele37 17537411 17540922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0802 1 439 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.469 8.57e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele37g0802 HLH 1.3e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0802 37 17537411 17540922 Lele39g0646 39 6613201 6616633 hybridization
Lele37g0802 37 17537411 17540922 Lele40g0659 40 14620162 14623665 hybridization