Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0794 ATGGAGAAGCACAAGTGCAAGCTCTGCTTGAGAAACTTCTCTAATGGCAGAGCTTTGGGAGGTCACATGAGGTCTCACATGGTGAATCTTCCTGTTCCTCCAAAACCAGAGCACCCACCACCGCCACCATTAGTCCAACTCAGCTTCGAGGCCGAGTCGGCCCCGTCGTTGTCTTCGCCGTCGTCGTCATCCTCAGAAGAAGAAGATGATGATAAAGCTCTCTGTTATGGCCTCAGAGAGAACCCTAAAAGAAGCTTTCGTCTTGTGGATCCTGATTTTTCGTTTCCTGTGGAATCCTCCTCTGTAATTCTTCAAGACAGAGAAAGCGAGACTGAATCGTCCAAGAATAATCCAACTCGAACAAGATCCAAAAGGGTATGTAATAATAATAAGAACCACCAGTTCCATCACCATCATCATCAGAAGAAGATGAAACCCAGTAATGATCATCCTCATCATCATCATAAGAATAAGACCGAGTCGTCCTGGGTTGAGCCGGAACCGGTTAGTTCGATTTCTGATGCTACCACCGAGGAAGATGTGGCATTTTGGCTTATGATGTTGTCTAGGGACGAATGGAAGAGACGAGAAGAAAAATACGAGGAAGAAGATGACGACGACGAAGAGGAAGAAGACGAGGACGAGGACGAGGATGAGGAAGATGACGAAGAAGAGAGATCTGTAGAAGATTCTGATGAATTCTACGAGGAGATGAAATCATCAAAGACAAGATCATCAGTTCGTGGAAGGTACAAATGTGAGACTTGTAATAAAGTATTTCGATCATATCAAGCATTGGGAGGTCACAGAGCGAGTCACAAGAAAATCAAACCGGTGATATGTGAACCGGAAGTTGATCAGCTTCAAGCGAATAATAACACTAATAATGCTCCTCCCATGGCGGCGGAGAAGAAAATCCATGAATGTCCGGTTTGTTTCAGAGTGTTTGCTTCAGGTCAAGCTCTTGGAGGACACAAGAGAACGCACGTGACCGGTTCCGCAACAACTCCGGTTCGAACCCCATTAACCAGGTTCGGATCAGATAACAACAGTTTGATAGATCTTAATCTTCCTGCTCCAGTTGATGAAGATGAAATCAGCCAAATTGAAAATTCTGCAGTTTCAGATGCAGAATTCCTTAAATCCAGTTCACAAATCTTCCGGGCACAAGTAGCTTAA 1179 0.447 MEKHKCKLCLRNFSNGRALGGHMRSHMVNLPVPPKPEHPPPPPLVQLSFEAESAPSLSSPSSSSSEEEDDDKALCYGLRENPKRSFRLVDPDFSFPVESSSVILQDRESETESSKNNPTRTRSKRVCNNNKNHQFHHHHHQKKMKPSNDHPHHHHKNKTESSWVEPEPVSSISDATTEEDVAFWLMMLSRDEWKRREEKYEEEDDDDEEEEDEDEDEDEEDDEEERSVEDSDEFYEEMKSSKTRSSVRGRYKCETCNKVFRSYQALGGHRASHKKIKPVICEPEVDQLQANNNTNNAPPMAAEKKIHECPVCFRVFASGQALGGHKRTHVTGSATTPVRTPLTRFGSDNNSLIDLNLPAPVDEDEISQIENSAVSDAEFLKSSSQIFRAQVA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0794 392 MobiDBLite consensus disorder prediction 100 175 - -
Lele37g0794 392 ProSitePatterns Zinc finger C2H2 type domain signature. 309 329 IPR013087 -
Lele37g0794 392 ProSitePatterns Zinc finger C2H2 type domain signature. 253 273 IPR013087 -
Lele37g0794 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 278 IPR013087 -
Lele37g0794 392 MobiDBLite consensus disorder prediction 32 46 - -
Lele37g0794 392 Pfam C2H2-type zinc finger 250 275 - -
Lele37g0794 392 Pfam C2H2-type zinc finger 4 27 - -
Lele37g0794 392 Pfam C2H2-type zinc finger 307 329 - -
Lele37g0794 392 Coils Coil 190 210 - -
Lele37g0794 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 307 334 IPR013087 -
Lele37g0794 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele37g0794 392 SUPERFAMILY beta-beta-alpha zinc fingers 303 331 IPR036236 -
Lele37g0794 392 Gene3D Classic Zinc Finger 248 329 - -
Lele37g0794 392 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 384 IPR044303 GO:0006355
Lele37g0794 392 MobiDBLite consensus disorder prediction 196 242 - -
Lele37g0794 392 SUPERFAMILY beta-beta-alpha zinc fingers 250 281 IPR036236 -
Lele37g0794 392 MobiDBLite consensus disorder prediction 65 81 - -
Lele37g0794 392 MobiDBLite consensus disorder prediction 201 231 - -
Lele37g0794 392 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele37g0794 392 SMART c2h2final6 4 26 IPR013087 -
Lele37g0794 392 SMART c2h2final6 251 273 IPR013087 -
Lele37g0794 392 SMART c2h2final6 307 329 IPR013087 -
Lele37g0794 392 MobiDBLite consensus disorder prediction 20 81 - -
Lele37g0794 392 MobiDBLite consensus disorder prediction 126 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0794 Lele-ChrLele37 17355843 17357021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0794 1 369 C2H2 Transcription Factor Family AT3G60580 40.212 8.52e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele37g0794 zf-C2H2_6 4.3e-12 CL0361