Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0780 ATGGATTATTCCACATACCAACAACATCAGCAGCAACAGGAACAAGGCTACGACTCATCTCAAAATCAAGCCTTCGATCAATCTTCCCAATCCTATTTTGGCTACAGTCAGCAATACGCGTACTATTCTAACCAAGATCAAGGAAATTCATATGCCCATCAACAATACCAGCAAGAATCCACCTCCATTCACCCTCCTGGAGTCCCATTACCTCCCGAACAGGCTCAGATTCAAAATCAACAATTTTCGAACCAGGATTCACGTGCGGCGCTCGGGGGCCCAATGAATCCGGAAGCTGCAGCTGTGGCGATAGCTGCTCTCTCGCAGCTCACTCAGTTTGCTGGAAACCCTCCGATTGGGCAGTCTCGATACAGAGGTGGTGGTGGTAGGGGCAGTAGACCATTTAGACGGGGTGGCCGTGGCCATTTCAATCCCCGAGGTCGTGGCCCTTACCGTGGTGGTGGGCATGGCCATGGGGGTGGTAGGCACTTACCATCTCATTCTTCAGAATTTGTACCTGCTGCTGCTGCTGGAGGGACATCGGTCGCACAACCTTCACCATTAGTATCTGTGCCTATTCCAGCACAGGTTCCAGCTGCACCATTGCATCTACCACCATGTAAATTATGGTGTGAAATTTGCAAGGTTGAGTGCAATTCTGCTGAGATTATGGAGCAGCACAAGAATGGAAAGAGGCATAAAAAGAATTTGCAGGTACATGAGGAATTACAGAGGCGCAAAGCTATAAATGGTCAACAGAGTAGCCAGATTCCCTCTTCTCAATTGAATTTAACAACTCAGGCTGAGAAAGCTCTTGAACTGAATACAGAAGGGTGTCCAGCAGAAAATATGATCTCTGGAGCGACAGGTGACAATCCTAAGAATGAACTTGATTTGCAGAACAATACAGGACAAACATCAGAAGTTCCAGCTAATGACCCTGAGGAAAACTCCAGGGATGGTTTGGCTTCAAGGGGCCGTGGTTCCAAGCGAAAAAAGATGAGAGGAGGCAGAGGAGGTAAATACATGAGAAATAACGATGGGTCAAGAAAGCCAGTGGAACCTCCAAAACCTAAACAGGCTTTATCTTTCATATGTGAGTTGTGTAATATTATATGTGAGTCACAGGTTGTGTATGACAGTCATTTGACTGGTAAAAAGCACCAATCGAATCTCAAGCGCGTCCATGGGCACCAAGCCATGTCCCAAGAACCAGGGCCTCAAGCAGTTCCCCCAACTAACACCAGTGCTATGTCTAATTCAATTGACATTAATGCTCTTGCAAATTCAATTAACTCTCAAGTCCAACAAGGTGTTAATGATCCACAAGTCCTCTTGGCTCAGCTCCTAATGACAGTACTGTCTCAAGCTCAAGTATCAACAGCAGCGGCACCCATAGGATCTGTAGCTTCTCAGCTTTCGGCACTCATACCAGGAGCTGGCTCAAGTTATGGGCTACCATTACAAAATGTCCCGCAGACACAAGCATTGGAAAGTGCTGCACATGGTGGGAATGAAGATCCTACAGGGAAAGAAAAAGATCGGGTGCTATCTGACCCACCGCTGGCTGCTGATCCTCAAACTGCAGGTGGAAGCTCTGAAACTGAAGATAAGGTAGCTTCAGAAAATCCAAGTGCAGCAAATGAGCAAGGAGCTTCAGAAGGCAATGGTCCTACTTCGTAG 1683 0.4706 MDYSTYQQHQQQQEQGYDSSQNQAFDQSSQSYFGYSQQYAYYSNQDQGNSYAHQQYQQESTSIHPPGVPLPPEQAQIQNQQFSNQDSRAALGGPMNPEAAAVAIAALSQLTQFAGNPPIGQSRYRGGGGRGSRPFRRGGRGHFNPRGRGPYRGGGHGHGGGRHLPSHSSEFVPAAAAGGTSVAQPSPLVSVPIPAQVPAAPLHLPPCKLWCEICKVECNSAEIMEQHKNGKRHKKNLQVHEELQRRKAINGQQSSQIPSSQLNLTTQAEKALELNTEGCPAENMISGATGDNPKNELDLQNNTGQTSEVPANDPEENSRDGLASRGRGSKRKKMRGGRGGKYMRNNDGSRKPVEPPKPKQALSFICELCNIICESQVVYDSHLTGKKHQSNLKRVHGHQAMSQEPGPQAVPPTNTSAMSNSIDINALANSINSQVQQGVNDPQVLLAQLLMTVLSQAQVSTAAAPIGSVASQLSALIPGAGSSYGLPLQNVPQTQALESAAHGGNEDPTGKEKDRVLSDPPLAADPQTAGGSSETEDKVASENPSAANEQGASEGNGPTS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0780 560 MobiDBLite consensus disorder prediction 528 560 - -
Lele37g0780 560 MobiDBLite consensus disorder prediction 73 90 - -
Lele37g0780 560 SUPERFAMILY beta-beta-alpha zinc fingers 349 396 IPR036236 -
Lele37g0780 560 MobiDBLite consensus disorder prediction 116 167 - -
Lele37g0780 560 MobiDBLite consensus disorder prediction 288 312 - -
Lele37g0780 560 MobiDBLite consensus disorder prediction 1 29 - -
Lele37g0780 560 MobiDBLite consensus disorder prediction 505 519 - -
Lele37g0780 560 SUPERFAMILY beta-beta-alpha zinc fingers 208 240 IPR036236 -
Lele37g0780 560 MobiDBLite consensus disorder prediction 44 64 - -
Lele37g0780 560 MobiDBLite consensus disorder prediction 44 91 - -
Lele37g0780 560 Gene3D Classic Zinc Finger 345 394 - -
Lele37g0780 560 Gene3D Classic Zinc Finger 205 242 - -
Lele37g0780 560 MobiDBLite consensus disorder prediction 281 357 - -
Lele37g0780 560 PANTHER OS06G0651300 PROTEIN-RELATED 6 444 - -
Lele37g0780 560 SMART ZnF_U1_5 361 395 IPR003604 GO:0003676|GO:0008270
Lele37g0780 560 SMART ZnF_U1_5 208 240 IPR003604 GO:0003676|GO:0008270
Lele37g0780 560 MobiDBLite consensus disorder prediction 498 560 - -
Lele37g0780 560 MobiDBLite consensus disorder prediction 313 327 - -
Lele37g0780 560 Pfam Zinc-finger of C2H2 type 210 233 - -
Lele37g0780 560 Pfam Zinc-finger of C2H2 type 364 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0780 Lele-ChrLele37 17153592 17164239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0780 364 392 C2H2 Transcription Factor Family AT5G61190 55.172 1.09e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0780 37 17153592 17164239 Lele39g0670 39 7080870 7084554 hybridization
Lele37g0780 37 17153592 17164239 Lele40g0674 40 15254227 15261372 hybridization