Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0729 ATGTACAAGGCGCGCCGAATAGCAGAAAGTTTTGGTTTGTCTATTAACAACAATCCCCAAAGTCTTCTTGGTTCACCTACGCGGCTCTGGGTTTGGCTGCAAATTTTCAGAGTTTTGAAAGCTTACTTGATCGCGAAGAATTTACCAATGAAACGGGAAGTGCAGCTAGAGCCGCCAGTTACGCAAAGCCTTGGGGATTCCGACCCTCTACTCGATAATCATGAGGAGGAGGAGCGGAAGGAGGAGGAGTGCCCAGGAAGCACGAGTGAAATTAAGAGTGAAGATGTCGAGGCTGGTTTACTTCCTTCTTGTCGAATTTGCCTGGAAAGCGATTCCGACCCAGGTGATGAATTGATATCACCGTGCATGTGCAAGGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACTTGCAAAGCCCAATTTCATCTTCGAGTTGAATCGTTTGAGGACAACTCCTGGCGTAAAATAAAGTTCAGGCTTTTTGTGGCAAGGGATGTTTTTCTTGTATTTTTGGCTGTACAAACTGTGATTGCGGCAATAGGTGCCTTTGCATACCTTATGGACAAAGATGGGGCATTCAGGAACTCTTTCGATGATGGTTGGGATAGGATACTGTCAAACCATCCTATACCATTTTATTACACTATTGGAGTACTAGCCTTCTTTGTGCTGCTTGGATTTTTTGGTCTCATTCTACATTGTTCCTCCCTCAATGCTAATGACTCCAGAATGGCTGGGTGTCAGAACTGTTGTTATGGATGGGGCATTTTGGATTGCTTTCCTGCATCAATGGAGGCATGCTTTGCTCTTGTGGTTGTTTTCGTCATCATCTTTGCAATTTTGGGTATAGCTTATAGTTTCCTGGCAGCCACCATGGCGATTCAAAGAATTTGGCAGAGACACTACCACGTACTGACCAAGAGGGAGCTAACTCAGGAATATGTTGTTGAGGATCTCCAAGGTTCTTATTCCCCACCAAAATTGGACCCAGAACACGAAGAGCGCTTGAAAATGCTCAAGCTTTTGTGA 1080 0.4528 MYKARRIAESFGLSINNNPQSLLGSPTRLWVWLQIFRVLKAYLIAKNLPMKREVQLEPPVTQSLGDSDPLLDNHEEEERKEEECPGSTSEIKSEDVEAGLLPSCRICLESDSDPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGAFAYLMDKDGAFRNSFDDGWDRILSNHPIPFYYTIGVLAFFVLLGFFGLILHCSSLNANDSRMAGCQNCCYGWGILDCFPASMEACFALVVVFVIIFAILGIAYSFLAATMAIQRIWQRHYHVLTKRELTQEYVVEDLQGSYSPPKLDPEHEERLKMLKLL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0729 359 MobiDBLite consensus disorder prediction 59 88 - -
Lele37g0729 359 CDD RING_CH-C4HC3_MARCH 104 155 - -
Lele37g0729 359 ProSiteProfiles Zinc finger RING-CH-type profile. 96 161 IPR011016 GO:0008270
Lele37g0729 359 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 64 359 - -
Lele37g0729 359 Pfam RING-variant domain 104 154 IPR011016 GO:0008270
Lele37g0729 359 SMART ringv_2 103 155 IPR011016 GO:0008270
Lele37g0729 359 MobiDBLite consensus disorder prediction 69 88 - -
Lele37g0729 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 167 IPR013083 -
Lele37g0729 359 SUPERFAMILY RING/U-box 102 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0729 Lele-ChrLele37 14128712 14133109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0729 50 359 C3H Transcription Factor Family AT1G11020 76.562 1.12e-167 469