LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele37g0707	ATGGCCTCCAATGTTCACAGAAATGGCGCCCAAAGGGGGACTGCGAAGCTCGATCGGATTGTTTCGGCGGGTACGAACCTTAAAGCGACGTCGTTTAAACCAAGGGTTCCTCCTTCTTCTCAGTCTCCGGGATCCGCTCTTCGCCGGAGTAGCCCGGCCTCTTTGGCAGCTAGAAACGGAGACGGAGTACCTGGAAGAGTTCGAGTGGCTGTAAGATTGAGACCTCGAAATGCTGAAGAAATGGTGGCGGATGCTGATTTTGCGGACTGCGTTGAATTGCAACCTGAGTTTAAAAGGTTGAAACTTCGGAAAAACAATTGGGATTCAGACACATATGAGTTTGATGAAGTATTTACTGAATTTGCATCACAGAAGCGTGTCTATGAAGTTGTTGCTAAGCCAGTAGTGGAGAGTGTTCTTGATGGGTATAATGGGACGGTAATGGCTTATGGCCAAACAGGCACTGGGAAAACTTTTACTGTTGGAGAATTGGGGGAAGACGACACATCCAATCGTGGCATCATGGTTCGTTCCATGGAGGATATTTTAGCAGATCTATCTCCAGAAACCGATTCAGTCACTGTTTCGTACTTGCAGCTGTACATGGAGACTCTCCAGGACTTGCTTAATCCTGCGAATGATAACATTCCCATTGTGGAAGATCCAAGAACTGGTGATGTATCTTTGCCTGGGGCTACGCTTGTAGAAATTAGGGACCAGCAGAGTTTTTTGGAGTTGCTAAGGGTGGGGGAAGCTCACCGTTTTGCTGCTAACACAAAGTTGAATACTGAATCTTCTCGTAGTCATGCTATTCTGATGGTACAAGTTAAGAGGTCTGTCTTAGAAAGTGAAGATATTACCTCTAATGAAAATAAGGACTCTTCTCATTTGACCAAACCGTCTAAACCACTTGTCCGCAAAAGCAAGCTGGTTTTGGTAGATTTGGCAGGTTCAGAGCGCATCCATAAGTCAGGGAGTGAAGGACAAATGCTAGAGGAAGCAAAATCTATAAATCTTTCACTTAGTGCATTGGGAAAATGTATTAATGCTCTAGCAGAGAACAGTTCTCATGTTCCAATTCGTGATTCGAAGCTCACCAGGTTGCTCAGAGATTCTTTTGGAGGTACTGCTAGGACTTCTTTGATTGTAACCATTGGACCCTCTCCACGTCATCGAGGAGAGACTGCAAGTACCATACAGTTTGGCCAGAGGGCAATGAAAGTCGAGAATATGTTGAAAATAAAGGAGGAATTTGATTATAAAAGTTTGGCCCGGAGGTTTGAAGTACAAGTAGATAAGTTGATTGCGGAAAATGAAAGGCAGCAGAAAGCTTTTGAGGCTGAAGTTGAAAAAATAAATTTGGAGGCTCAGAGTCGTATAGCTGAAGTTGAGAGGAATTTTGCAGATGCATTGGAGAAAGAGAGGTTGAAATGTCAGTTGGAGTACATGGATTCAGTCAAGCAATTGGAGCATAAGTTGGTATTGAGTCAAGAAAGACATGACTGCAATGGCTTTGTGGATGGTCACGGAGAGGAATCTGGGCCATCTTCTGCAGATGAAGTTTCTGAGATCAAAAGGATGCTAAAAAATGAAACTAATCGTAGAAAGGCAGCTGAAGAAGAGGTAGAAATTCTAAAAAGTCAGCTGGGGAAACATTCACAGACAGAGGCTGGAGGTGATGTGGAGATTCTAAATCTTCGCAGAATGCTGGAAGAGGAGGCTCATCAGAAAACGAAACTTGAAGAAGAGATAATAATACTACGAAGTCAGTTATTACAATTGAACTATGAAGCTGATCAGATGAGAAGGTGTTTGGAAAGTGGAGGGTCTGGAAATGCATTTGCTGCCATGGATTCTGCCACGTCTCAAGCTGGGAATTCTCAACTCAGAGACAATGGGAGTGGTCAGAAGGCATCTGTTGCTACTCTTTTTGAACAAGTCGGATTGCAAAAGATATTGACATTACTGGAGTCAGATGATGCCAATGTAAGGATTCATGCAGTGAAAGTGGTTGCCAACCTGGCAGCTGAAGAGGCAAATCAGAAAAGAATTGTAGATGCTGGTGGTCTTACATCCTTACTTATGCTTCTTAGAAGATATGAGGATGAAACTGTTCGCAGGGTAGCAGCAGGGGCAATAGCCAATCTGGCGATGAATGAAGCTAATCAAGAACTTATTATGGCTGAAGGTGGAATTACGCTCTTATCAATGACTGCATCTGATGCTGAAGATCCACAAACTCTCCGAATGGTAGCTGGGGCTATTGCTAATCTATGTGGAAATGAGAAGTTATTAATGAAGCTGAGATCTCAGGGTGGTATAAAGGCTTTACTGGGAATTGTAAGGTGTGGACATTCTGATGTTCTTTCCCAAGTTGCTCGAGGAATTGCCAACTTTGCAAAATGCGAGTCCCGAGCTTCTAGTCAAGGGATAAAAAGTGGCAGATCCTTTTTAGTGGAAGACGGTGCGCTTCCATGGATAGTGCAAAATGCTACTAATGAAGCTGCTCCAATCAGGCGCCACATTGAGCTTGCAATTTGCCACTTGGCACAGCATGAAGTGAATGCAAAAGACATGATAAGTGGAGGTGCCCTTTGGGAGCTTGTGCGGATTTCAAGGGATTGTTCACGAGAGGACATACGGAATCTTGCCCGTCGAACTCTAAATAATAGCCCAACATTTAAATCAGAACTGAGACGACTACGAATCGATTATTGA	2718	0.4375	MASNVHRNGAQRGTAKLDRIVSAGTNLKATSFKPRVPPSSQSPGSALRRSSPASLAARNGDGVPGRVRVAVRLRPRNAEEMVADADFADCVELQPEFKRLKLRKNNWDSDTYEFDEVFTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTVGELGEDDTSNRGIMVRSMEDILADLSPETDSVTVSYLQLYMETLQDLLNPANDNIPIVEDPRTGDVSLPGATLVEIRDQQSFLELLRVGEAHRFAANTKLNTESSRSHAILMVQVKRSVLESEDITSNENKDSSHLTKPSKPLVRKSKLVLVDLAGSERIHKSGSEGQMLEEAKSINLSLSALGKCINALAENSSHVPIRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIQFGQRAMKVENMLKIKEEFDYKSLARRFEVQVDKLIAENERQQKAFEAEVEKINLEAQSRIAEVERNFADALEKERLKCQLEYMDSVKQLEHKLVLSQERHDCNGFVDGHGEESGPSSADEVSEIKRMLKNETNRRKAAEEEVEILKSQLGKHSQTEAGGDVEILNLRRMLEEEAHQKTKLEEEIIILRSQLLQLNYEADQMRRCLESGGSGNAFAAMDSATSQAGNSQLRDNGSGQKASVATLFEQVGLQKILTLLESDDANVRIHAVKVVANLAAEEANQKRIVDAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDPQTLRMVAGAIANLCGNEKLLMKLRSQGGIKALLGIVRCGHSDVLSQVARGIANFAKCESRASSQGIKSGRSFLVEDGALPWIVQNATNEAAPIRRHIELAICHLAQHEVNAKDMISGGALWELVRISRDCSREDIRNLARRTLNNSPTFKSELRRLRIDY	905

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele37g0707	905	FunFam	Kinesin-like protein	617	893	-	-
Lele37g0707	905	Gene3D	-	616	808	IPR011989	-
Lele37g0707	905	SUPERFAMILY	ARM repeat	637	890	IPR016024	-
Lele37g0707	905	MobiDBLite	consensus disorder prediction	28	49	-	-
Lele37g0707	905	ProSitePatterns	Kinesin motor domain signature.	308	319	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
Lele37g0707	905	SMART	arm_5	719	760	IPR000225	GO:0005515
Lele37g0707	905	SMART	arm_5	677	718	IPR000225	GO:0005515
Lele37g0707	905	SMART	arm_5	761	801	IPR000225	GO:0005515
Lele37g0707	905	SMART	arm_5	637	676	IPR000225	GO:0005515
Lele37g0707	905	Pfam	Armadillo/beta-catenin-like repeat	680	717	IPR000225	GO:0005515
Lele37g0707	905	Pfam	Kinesin motor domain	72	408	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele37g0707	905	SMART	kinesin_4	64	416	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele37g0707	905	Coils	Coil	563	597	-	-
Lele37g0707	905	MobiDBLite	consensus disorder prediction	28	61	-	-
Lele37g0707	905	Coils	Coil	424	473	-	-
Lele37g0707	905	FunFam	Kinesin-like protein	58	438	-	-
Lele37g0707	905	PRINTS	Kinesin heavy chain signature	358	379	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele37g0707	905	PRINTS	Kinesin heavy chain signature	142	163	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele37g0707	905	PRINTS	Kinesin heavy chain signature	309	327	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele37g0707	905	ProSiteProfiles	Kinesin motor domain profile.	66	408	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Lele37g0707	905	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	647	689	IPR000225	GO:0005515
Lele37g0707	905	CDD	KISc	66	406	-	-
Lele37g0707	905	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	688	731	IPR000225	GO:0005515
Lele37g0707	905	Gene3D	Kinesin motor domain	61	438	IPR036961	-
Lele37g0707	905	PANTHER	CENTROMERE PROTEIN E	66	624	-	-
Lele37g0707	905	Coils	Coil	521	555	-	-
Lele37g0707	905	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	66	444	IPR027417	-
Lele37g0707	905	Gene3D	-	809	895	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele37g0707	Lele-ChrLele37	9167570	9189720	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele37g0707	61	410	Calmodulin-binding Proteins	AT5G65930	34.605	1.04e-45	176