Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0698 ATGGTGAGAGGGAAAATAGAGATGAAGCGTATAGAGAACGCTACCAACAGACAAGTGACATTCTCAAAGAGGCGTAATGGACTCTTAAAGAAAGCTTTTGAGCTCTCAGTTCTCTGTGAAGCTGAAGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAGCTCTATCAATTCTCAAGCTCCAGGTTGCAGGATACAATTGAACGATATCGTAGTTATACTAGAGATGCTGAGACAGCCTCCAGATACATGGAACTAAATATGCAGGTTAATTATTCATTATTTCTTCTTTTTATCTCATAA 300 0.3967 MVRGKIEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPRGKLYQFSSSRLQDTIERYRSYTRDAETASRYMELNMQVNYSLFLLFIS 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0698 99 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Lele37g0698 99 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Lele37g0698 99 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele37g0698 99 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 75 - -
Lele37g0698 99 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele37g0698 99 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele37g0698 99 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele37g0698 99 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele37g0698 99 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele37g0698 99 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele37g0698 99 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Lele37g0698 99 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0698 Lele-ChrLele37 7197181 7200684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0698 1 88 MADS-box Gene Family AT5G62165 71.591 4.26e-44 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele37g0698 SRF-TF 5.1e-27 No_clan