LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele37g0671	ATGACAGGAGCTGAATCAAACAGACCCATCACAAAGATCAAAAGGTACATAGGTGTCAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCATCTCAACATGTGAGGCTATGGCTCGGAACCTATGACACGCCTGAGGAAGCGGCTCGGGCTTACGACGAAGCAGCTCGGACCCTACGTGGTGAAAACACCCGAACCAACTTCTCACCGCCAGCTAGCCAATTAGCCACAGGTGATCAGTCTGAGTCTGAATCCAAGCATGGGCTAAATTTTGCTTCTTTGAAAGCTAAGCTGAGCAGGAATCTTCAAAGTATAATGCCCAGATCAGGAAATGAGACGACGTCGTCAAAGAGTAGGGTAAGTGACCCTATCACTTTTGCAAGCATATTTCATCCCAGGAGGAGTTTCCTACCGTACCAGATTTCTTCATCACTTGATACAATGAAGAACATGGAGAGTATGGTGCAGCCTAGTATTATGGTACCTCCAACTGAAACTGATGTTAATCATCAGCCTTGTTCTTGGGAAAATCCCAGTGTCTCTGATGATTGTGGCTTCTCCGATCATTGGGTCGGGTTCAGACAAACTGTGACTGTGGACTCTGCTGTGTCAGACAGGTCGGATGCCGGGGAAGTAAGTACTGAAGGGGATCATCAAGGGATTATGGAGCAAGTGATGGGGTGGATCAATTGTGGCCCTGAGGAAGGTTTAAGAAGTAAGAGGCTTAAGGTGTCTTCTTCAGTATTTGTGCCTCCAACTTTCAGTGGGTCTTCATGTAGTAGTAGTTGTGGCTCTCCCTATCATGGTTATGATATTTAG	828	0.4698	MTGAESNRPITKIKRYIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARTLRGENTRTNFSPPASQLATGDQSESESKHGLNFASLKAKLSRNLQSIMPRSGNETTSSKSRVSDPITFASIFHPRRSFLPYQISSSLDTMKNMESMVQPSIMVPPTETDVNHQPCSWENPSVSDDCGFSDHWVGFRQTVTVDSAVSDRSDAGEVSTEGDHQGIMEQVMGWINCGPEEGLRSKRLKVSSSVFVPPTFSGSSCSSSCGSPYHGYDI	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele37g0671	275	MobiDBLite	consensus disorder prediction	64	90	-	-
	Lele37g0671	275	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	14	129	-	-
	Lele37g0671	275	Gene3D	AP2/ERF domain	14	73	IPR036955	GO:0003700\|GO:0006355
	Lele37g0671	275	PRINTS	Ethylene responsive element binding protein signature	16	27	IPR001471	GO:0003700\|GO:0006355
	Lele37g0671	275	PRINTS	Ethylene responsive element binding protein signature	38	54	IPR001471	GO:0003700\|GO:0006355
	Lele37g0671	275	Pfam	AP2 domain	15	64	IPR001471	GO:0003700\|GO:0006355
	Lele37g0671	275	FunFam	ethylene-responsive transcription factor RAP2-11	14	73	-	-
	Lele37g0671	275	MobiDBLite	consensus disorder prediction	63	90	-	-
	Lele37g0671	275	SUPERFAMILY	DNA-binding domain	15	72	IPR016177	GO:0003677
	Lele37g0671	275	SMART	rav1_2	15	78	IPR001471	GO:0003700\|GO:0006355
	Lele37g0671	275	CDD	AP2	14	71	IPR001471	GO:0003700\|GO:0006355
	Lele37g0671	275	ProSiteProfiles	AP2/ERF domain profile.	15	72	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele37g0671	Lele-ChrLele37	5957158	5957985	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele37g0671	15	79	AP2-EREBP Transcription Factor Family	AT5G19790	67.647	3.75e-26	101

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele37g0671		AP2	4e-16	CL0081