Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0630 ATGCCGGCTGTTTACGGAGCTCGCTTGACAACCTTCGAAGATTCCGAGAAGGAGAGCGAATATGGTTACGTATCAGGACCAGTCGTGGTTGCAGATGGCATGGCTGGGGCTGCTATGTATGAACTAGTGCGTGTCGGTCGGGATAATCTTATTGGTGAAATTATTCGTTTAGAAGGGGATTCTGCTACTATCCAAGTTTATGAGGAAACAGCAGGCTTAATGGTAAATGATCCTGTCCTACGGACACACAAGAGGCCTTTGAAAACTATTGCTAAAAGATCTGGTGATGTCTACATTCCCCGTGGTGTCTCTGTTCCAGCACTTGATAAAGATACACTTTGGGAGTTTCAGCCTAAAAAAATTGGTGAAGGGAACCTTTTGACTAGTGGAGATTTATACGCTACGGTTTTTGAGAACAGTTTAATGCAACACCAAATTGCACTTCCTCCTGATGCAATGGGAAAAATAACATACATTGCACCACCTGGTCAATATTCCCTGAAGGATACTGTGTTGGAGCTTGAGTTTCAAGGTGTCAAAAAACAGTTTACAATGCTTCAGACATGGCCTGTACGTACTCCGAGGCCTGTTGCATCAAAACTAGCAGCTGACACTCCTCTTCTTACGGGTCAGCGTGTTCTTGATGCCCTCTTCCCTTCTGTTCTTGGTGGGACTTGTGCAATACCTGGAGCCTTTGGTTGCGGTAAAACTGTCATTAGTCAGGCTCTTTCAAAGTATTCCAACTCTGATTCTGTTGTTTATGTTGGTTGCGGGGAACGTGGAAATGAAATGGCAGAGGTCTTGATGGACTTTCCACAACTTACAATGACATTACCTGATGGCCGAGAAGAATCTGTCATGAAGCGAACAACTCTGGTGGCCAACACTTCAAACATGCCTGTGGCTGCTCGTGAGGCTTCAATTTATACAGGAATCACTCTAGCTGAGTATTTTAGAGATATGGGTTACAATGTCAGTATGATGGCAGATTCTACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCTTACCTTGCTGCACGTTTAGCTTCTTTCTATGAACGTGCTGGAAAAGTCAAATGCCTTGGGGCCCCCGAACGTACTGGTAGTGTCACAATTGTTGGTGCTGTTTCTCCACCAGGAGGGGATTTCTCTGATCCTGTGACATCTGCAACTCTTAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCCCAGAGGAAGCATTTTCCTTCTGTGAACTGGCTTATTTCCTATTCGAAGTACGCGGGTGCATTGGAATCCTTCTATGAGCAATTTGATCCAGATTTCATAAACATGAGGACAAAGGCTCGTGAAGTGCTGCAGAGAGAAGATGACCTCAATGAAATTGTCCAGCTTGTAGGCAAGGACGCTTTAGCTGAAGGAGACAAGATCACATTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAGAATGCTTTTACTCCATATGACAAATTCTGCCCCTTCTATAAATCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCGAATCAGGCAGTGGAGAGGGGAGCTGGTACAGATGGTCAAAAGATAACTTACACCCTCATCAAGCATCGTTTGGGAGATCTCTTCTACCGTTTAGTGTCACAGAAATTTGAGGATCCAGCAGAAGGTGAAGCAGCTCTGGTTGACAAATTTAAGAAGCTTCATGAGGACCTGACCAATGGTTTCCGCAATCTTGAGGATGAAACCCGATAG 1806 0.4463 MPAVYGARLTTFEDSEKESEYGYVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGNLLTSGDLYATVFENSLMQHQIALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDSVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGAPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYAGALESFYEQFDPDFINMRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGTDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEAALVDKFKKLHEDLTNGFRNLEDETR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0630 601 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 24 589 IPR005725 GO:0033180|GO:0046961|GO:1902600
Lele37g0630 601 FunFam V-type proton ATPase catalytic subunit A 112 183 - -
Lele37g0630 601 Gene3D - 12 81 IPR023366 -
Lele37g0630 601 Hamap V-type ATP synthase alpha chain [atpA]. 16 600 IPR022878 GO:0046034|GO:0046961
Lele37g0630 601 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 210 436 IPR000194 GO:0005524
Lele37g0630 601 Gene3D - 84 435 IPR027417 -
Lele37g0630 601 FunFam V-type proton ATPase catalytic subunit A 171 435 - -
Lele37g0630 601 FunFam V-type proton ATPase catalytic subunit A 20 87 - -
Lele37g0630 601 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 82 IPR004100 GO:0046034|GO:1902600
Lele37g0630 601 CDD ATP-synt_V_A-type_alpha_N 24 84 - -
Lele37g0630 601 FunFam V-type proton ATPase catalytic subunit A 437 590 - -
Lele37g0630 601 ProSitePatterns ATP synthase alpha and beta subunits signature. 427 436 IPR020003 GO:0005524
Lele37g0630 601 Gene3D - 112 183 - -
Lele37g0630 601 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 449 531 - -
Lele37g0630 601 CDD V_A-ATPase_A 85 438 - -
Lele37g0630 601 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 84 599 IPR022878 GO:0046034|GO:0046961
Lele37g0630 601 Coils Coil 579 599 - -
Lele37g0630 601 CDD ATP-synt_V_A-type_alpha_C 453 559 - -
Lele37g0630 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 441 IPR027417 -
Lele37g0630 601 Gene3D - 438 600 IPR024034 -
Lele37g0630 601 Pfam ATPsynthase alpha/beta subunit N-term extension 84 201 IPR031686 -
Lele37g0630 601 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 22 84 IPR036121 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0630 Lele-ChrLele37 5264830 5270984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0630 1 601 Primary Pumps ATPases(2) AT1G78900 89.406 0.0 1142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0630 37 5264830 5270984 Lele37g0630 37 5264830 5270984 ECH
Lele37g0630 37 5264830 5270984 Lele39g0796 39 17007468 17014138 hybridization
Lele37g0630 37 5264830 5270984 Lele40g0564 40 4796899 4799179 hybridization