Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0581 ATGACGGAAGCTTGCAAAAAATCTTCCATTTTTGGTCAGTCATATAATTCTCTCTACGTCAATCCTCTCACTGAACTCAGGCACAGTCGTAGCTGCAGCGACAGTAGCAGCTTAGCTTCAAAATGTCACAAATGTGAAGATTTCACGAACAGAGAAGTTTCAACTGATAATAAAGAGAATGGCGTCACGCCCAAGAAGAAGAAAGATGTTGTAACTCGCTTTTGTGACAAGGAAAATGCAATGCCTGCAAATGGGTTGTCATCTTCTTTGCCTAATAAACACTTCTCAAAGTCCATGTCTTTGTCCACAGCTAGGATTTTGAAGCCAAACTCGCTTCAGTTCTGTATGCAAATGAACGAGCCTGAAAAAGCTTTTGGCCTTGGGTACAAGGTATGGGATAATGTATTTTCTGAAAATTTGAGCTCTTTAAAGATTTGGGATTTCTCTGATTCAGAGGCAGCCCCAGCTTCTTCCTGGTCAACCTTGCCCAGTAAGTCTTTGATATGTAGACCGTTGCCTGTAGATATTGGAAGTTGTACATGCATCATTGTAAAGGAAGCAAAACCAGAAGGACTATCTGGGGGCCCTATGTATACGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTATCACAAGAGGAGGAATGGGAGGTCTCAGTTCATTATAGCTCAGAATGTAAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAACAGTAACGGCTAATCTCCTGGGTTCTAAATACCAAATATGGGATGAGGGATATCGTCATAATTCACATGATAAACAGCTAAAACCACCTCTTGCTGTTGTGATGTTTATCCCTACAGCAGCAACATGTACAGGAAGCTACAGAAGCATGAGAGCATATGTGCCCAAGCATCAGTCTATGTCACTAAAGAACATAACCCAGGTACAACATATCAAAGGACTGCCCATAGATTGGGAGGGAAAGTTGGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGACTTCAAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTAGAATTCAAAGATCAGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAATCGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTCTGCTTGAGTTTAGCTTCCATTGATACCAAGCTCTGTTGCTTGGTGTAG 1266 0.41 MTEACKKSSIFGQSYNSLYVNPLTELRHSRSCSDSSSLASKCHKCEDFTNREVSTDNKENGVTPKKKKDVVTRFCDKENAMPANGLSSSLPNKHFSKSMSLSTARILKPNSLQFCMQMNEPEKAFGLGYKVWDNVFSENLSSLKIWDFSDSEAAPASSWSTLPSKSLICRPLPVDIGSCTCIIVKEAKPEGLSGGPMYTLYTYEGQGRQNRKLAVAYHKRRNGRSQFIIAQNVKGLLSNSDDSFLGTVTANLLGSKYQIWDEGYRHNSHDKQLKPPLAVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKNITQVQHIKGLPIDWEGKLDKVHQLFSRVPLYNKTSKQFELDFKDKGRAELRIQRSVKNFQLTLEENGKQTILQLGRIGKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCLV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0581 421 Gene3D Tubby Protein; Chain A 160 420 IPR025659 -
Lele37g0581 421 PANTHER TUBBY-RELATED 65 418 - -
Lele37g0581 421 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Lele37g0581 421 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Lele37g0581 421 PRINTS Tubby superfamily signature 244 268 IPR000007 -
Lele37g0581 421 PRINTS Tubby superfamily signature 357 373 IPR000007 -
Lele37g0581 421 SUPERFAMILY Tubby C-terminal domain-like 156 419 IPR025659 -
Lele37g0581 421 Pfam Tub family 170 415 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0581 Lele-ChrLele37 4781486 4784134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0581 56 314 TUB Transcription Factor Family AT1G16070 55.303 1.33e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele37g0581 Tub 5.9e-40 CL0395