Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0547 ATGAAAGAAAGAGATCCAGTGTCAACAATAGGCGTATTTTACAGATGGACAGTGACTCGAGTCCATGAACCCTGCACGAGTCCACAAACTTCAATTCTCCTCAAAGATAATATTTTACAGATGGACGGTGACTCGAGAGAAATGCTTAAACAAGTTTCTGATGCTTTCCAGCAAAAATGGCTTAACAGTGACTCGTCAGTTGTTGAATGGTTGAAGAGTGATCTTCAACAACCAGAACTGGGCGAGCAGTCAAATAACCCAGAAAAGAAAGAGGGAAAACGCAGGGCTCTTCTTCTTCAGCAAGACGAGGAGCTGGGTCTAGAGGCTGAACGGAGACGCCTTTGGGGGCTGCATTCTGTTTCTTCATCTGGATCAAAGGAAGTAAGAGCCATGTTTCGTGTCCGAGGAAGGTGGGCCCGATTCTCAGGGCCGTTCAAGCTTCTTCGAACCGCGTCATTATGTAGCAACGCTAAAAACTCTTCCAGCAATTCCACGAAGAACGACAAGATTATTCGCGATGAAAGGTATCGGCAGCTGGAGAATCTTGACTTCATGACTGCGGCAAAGATCCTTTTTACCGGCCCTTCAAAGGAAAAGAAATTTGGGCTTGATTTCCATCTTGTGCAACTTTTCTTTGCCTGCTTGCCTTCTTTAGCTGTATATTTGGTGGCTCAATATGCTCGTTATGATATGAAAATAATGGAGGCGGAAGTGGAGCAGAAAAGGAAGATAAGGGATGAAAAGGAAGCAAAAGAAAGAGAAGAATTAGAGAAGTTAAATCCCCCTCCCCTTGATCCTCCGCTTCAGGAGGTGAAAGTGAGACTAGACAAACTCGAGGAGGCAGTAAAGGAGATTGTGACTGGAACAAAGAAACAATCAAACAGCAACCTCCCTGAAAATCAAGTGAAAGAAGATGATGAGAAAAAACATGCCAAGTTTTCTTCTTCTACAGAAAGCGACAAAAACAATTCTTTACCACCAGATAAAGTTGTGGAGAAAGATAATAATCTTGGTAAGCCTGTTAAGCCAAGCCCAGAATCAGGCCAAGAGAGTCCAAAGAATGAAACGGCAGCTCCAAAATCTTCTCCCCATGAGCAGAAAAGCCAAGGTAAAGGTGGTGGTAGAAGTAGTGAGCTGCAAGATCCAATGAGAGTACTGTTATGGTATGGCCAAGCATGTAGTCTTGTTCATGAGCTCTGCCTTAAGTTTCTTTTTGACGTTCCTTTTGAGATTACAACCCGATGGATCCATCTGACGGTTCCTATTGACAGACTAGCTTTGCAGGAGATTCATTCAGAAATACTGAAGCTTTTCCACCTATTAAATCTCATGAAGTTTGATCATTTGAATCATTTCTTTGGCACCCAGATAATGGATGGTCGCAAAAAATCTTCCATATCGGTCCAGTCATACAATTCTATCCATGTTAATCCCCTCGCTGAGCTCAGGCATAGCCGGAGCTGTAGCTGTGACTATGGCCGTTTAGCTAACAAAGGTGACGACTTGGAAGATTTCGCTCACCGAGGCGGGAAAATCCTGATGCATAACAAAGAGAATGCGACACCTAACAAAAAAGAAATTGTAGTTTCTTCTTCTGGTGATGATGAAAAGGAAAATGCTGTGCCCAAAAAGTTCTCGAATTCTAGGTCTTTGTCCACTTATAGGATCTTGAAGCCTACTTCGCTTCAGTTCTGCATGAAAATGAATGATTATTCTGAAAAGGCTTTTGGGTCTAAGATATGGCATCGTTTTGATTTGGAGAATTCGAGCTCTATGAATGTTTGGGACTTTTCTGATTCTGAGGCAGCTCCAGCTTCATCGTGGTCAACTCTGCCAAACAAGAAGCATCGCCAGAAGGACTATCTGGGGGCACATTTTTCTCTCATATACCTATTGGCTGATCTTAGGATCCTTAGACTTGGTAAAGGCCGACAGAATAGGAAACTGGCTGTGGCTTACCATAAGAGACGAAATGGGAGGTCTCAATTCACCATAGCTCAGAGTGTAAAAGGACTGTTGTCTAATTCAGATGATAGTCTTCTTGGAACAGTGATAGCCAACTTTATGGGTTCAAAATACCACATATGGGATCAGATTAATAGCAACATGTACAGGAAGTTACAGAAGCATGAGGGCATATGTACCCAAACATCAATCTATGTTACAGAAGAACATAAATCAGGTACAACATATGAAAGGACCGCCAACAGATTGGGAAGAAAAGCTAGGAAGTTTGAACATATATGTATTATGTAA 2256 0.4242 MKERDPVSTIGVFYRWTVTRVHEPCTSPQTSILLKDNILQMDGDSREMLKQVSDAFQQKWLNSDSSVVEWLKSDLQQPELGEQSNNPEKKEGKRRALLLQQDEELGLEAERRRLWGLHSVSSSGSKEVRAMFRVRGRWARFSGPFKLLRTASLCSNAKNSSSNSTKNDKIIRDERYRQLENLDFMTAAKILFTGPSKEKKFGLDFHLVQLFFACLPSLAVYLVAQYARYDMKIMEAEVEQKRKIRDEKEAKEREELEKLNPPPLDPPLQEVKVRLDKLEEAVKEIVTGTKKQSNSNLPENQVKEDDEKKHAKFSSSTESDKNNSLPPDKVVEKDNNLGKPVKPSPESGQESPKNETAAPKSSPHEQKSQGKGGGRSSELQDPMRVLLWYGQACSLVHELCLKFLFDVPFEITTRWIHLTVPIDRLALQEIHSEILKLFHLLNLMKFDHLNHFFGTQIMDGRKKSSISVQSYNSIHVNPLAELRHSRSCSCDYGRLANKGDDLEDFAHRGGKILMHNKENATPNKKEIVVSSSGDDEKENAVPKKFSNSRSLSTYRILKPTSLQFCMKMNDYSEKAFGSKIWHRFDLENSSSMNVWDFSDSEAAPASSWSTLPNKKHRQKDYLGAHFSLIYLLADLRILRLGKGRQNRKLAVAYHKRRNGRSQFTIAQSVKGLLSNSDDSLLGTVIANFMGSKYHIWDQINSNMYRKLQKHEGICTQTSIYVTEEHKSGTTYERTANRLGRKARKFEHICIM 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0547 751 Coils Coil 231 257 - -
Lele37g0547 751 Pfam Tub family 641 734 IPR000007 -
Lele37g0547 751 Gene3D Tubby Protein; Chain A 610 749 IPR025659 -
Lele37g0547 751 MobiDBLite consensus disorder prediction 347 375 - -
Lele37g0547 751 MobiDBLite consensus disorder prediction 300 316 - -
Lele37g0547 751 MobiDBLite consensus disorder prediction 286 378 - -
Lele37g0547 751 PANTHER F23A5.5 131 327 - -
Lele37g0547 751 SUPERFAMILY Tubby C-terminal domain-like 632 705 IPR025659 -
Lele37g0547 751 Coils Coil 268 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0547 Lele-ChrLele37 4498016 4509497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0547 516 698 TUB Transcription Factor Family AT1G16070 44.444 2.25e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele37g0547 Tub 2e-06 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0547 37 4498016 4509497 Lele37g0547 37 4498016 4509497 ECH
Lele37g0547 37 4498016 4509497 Lele39g0882 39 17757681 17765190 hybridization
Lele37g0547 37 4498016 4509497 Lele40g0492 40 4101605 4104018 hybridization