Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0479 ATGGGAAGTCCCCTGCTTCATTTGACTTTGAATCCGAATATCTATCGTTCAAGAAGCCCGCGAATCCATCGACACTCCCAAATTCGAGGGCACAGCTTTGCCCATAGCGTTGGAGAGCTTCGGAGGCAAGAATTTGGCAATGACGATAGAACAATTCATGAGTCAAAACTATGCAGAATGCTCTATCAGGGGAAACAATGCTCTTATGGAAACACCTGCCGTTTCCTTCATACAGGGCCCGGCGGTTTGAATCCTAGAGACACTGCAACAGTAGAAGTAATTCCTACTGGACATGAATTAGGGAAGCTTGATGGCTACTCAACAGCTGAATGCAGGGTAGTGCAAACTTCTGCTGCTGCTGCTACAAATATGTCAAGTGGTGCAGTGTCAACTGGCACTTTGCTTAAGAATCTGAAGGAATCATTTGCATGGGATTACAAATTCAACAGAAATGAACTACACAGGATCAGTCGCATCTATGCTGATTGGATTTAA 495 0.4465 MGSPLLHLTLNPNIYRSRSPRIHRHSQIRGHSFAHSVGELRRQEFGNDDRTIHESKLCRMLYQGKQCSYGNTCRFLHTGPGGLNPRDTATVEVIPTGHELGKLDGYSTAECRVVQTSAAAATNMSSGAVSTGTLLKNLKESFAWDYKFNRNELHRISRIYADWI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0479 164 ProSiteProfiles Zinc finger C3H1-type profile. 57 80 IPR000571 GO:0046872
Lele37g0479 164 Pfam CCCH-type zinc finger 56 77 IPR041367 -
Lele37g0479 164 SUPERFAMILY CCCH zinc finger 51 78 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0479 Lele-ChrLele37 3949444 3951080 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele37g0479 zf-CCCH_4 1.2e-05 CL0537