Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0477 ATGCTATGGTCAAAGGGATTTTCTAGGGTTCATGGCGGATTTGATATTGATAAGATTTTTGGGACTATTTCTGTTGTGCCATTAGCTAGGGGAAGGAAGATGAGTAGGCCTGGAGACTGGATGTGCAGGTCATGCCAGCACCTTAACTTTCAGAGAAGGGACATGTGTCAGAGATGTGGGGATTCAAAGTTTGGAGATTTTGTTGGTATTAATGGTGGTGGTGGCTATGGTGGAGGAGGAGGAGGAGGAAGAATGACGACGATGATGGGATCTTCATTTGGTGGTTCTGATGTTCGTCCCGGTGACTGGTACTGTTCTGCCGGAAACTGTGGAGCTCATAACTTTGCGAGCCGATCAAGCTGCTTCAAGTGTGGTGCTTTGAAAGATGACTTTGCTTCTTCCTTCACCACCACCACTGATTTCTCTTGTTCCAGACCTTCTGCTTCTGCTTCTGCTTCTGCTTCTTCTAGGCCTTCATGGAAATCTGGCGACTGGATTTGCAACAGGTCAGGGTGCAACGAGCACAACTTTGCTAGCAGAATGGAATGCTTTAAATGCAGTGCCCCGAGGGACACGTACTAG 582 0.4759 MLWSKGFSRVHGGFDIDKIFGTISVVPLARGRKMSRPGDWMCRSCQHLNFQRRDMCQRCGDSKFGDFVGINGGGGYGGGGGGGRMTTMMGSSFGGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGALKDDFASSFTTTTDFSCSRPSASASASASSRPSWKSGDWICNRSGCNEHNFASRMECFKCSAPRDTY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0477 193 ProSitePatterns Zinc finger RanBP2-type signature. 40 59 IPR001876 -
Lele37g0477 193 ProSiteProfiles Zinc finger RanBP2 type profile. 36 65 IPR001876 -
Lele37g0477 193 SMART zf_4 38 62 IPR001876 -
Lele37g0477 193 SMART zf_4 163 189 IPR001876 -
Lele37g0477 193 SMART zf_4 101 127 IPR001876 -
Lele37g0477 193 Gene3D - 95 130 - -
Lele37g0477 193 Gene3D - 153 192 - -
Lele37g0477 193 Gene3D - 32 64 - -
Lele37g0477 193 FunFam Ran-binding zinc finger protein 93 130 - -
Lele37g0477 193 ProSitePatterns Zinc finger RanBP2-type signature. 165 186 IPR001876 -
Lele37g0477 193 FunFam Ran-binding zinc finger protein 154 192 - -
Lele37g0477 193 PANTHER ZINC FINGER PROTEIN 96 191 - -
Lele37g0477 193 SUPERFAMILY Ran binding protein zinc finger-like 94 130 IPR036443 -
Lele37g0477 193 ProSiteProfiles Zinc finger RanBP2 type profile. 161 192 IPR001876 -
Lele37g0477 193 SUPERFAMILY Ran binding protein zinc finger-like 31 66 IPR036443 -
Lele37g0477 193 MobiDBLite consensus disorder prediction 142 161 - -
Lele37g0477 193 SUPERFAMILY Ran binding protein zinc finger-like 155 191 IPR036443 -
Lele37g0477 193 ProSitePatterns Zinc finger RanBP2-type signature. 103 124 IPR001876 -
Lele37g0477 193 ProSiteProfiles Zinc finger RanBP2 type profile. 99 130 IPR001876 -
Lele37g0477 193 Pfam Zn-finger in Ran binding protein and others 99 128 IPR001876 -
Lele37g0477 193 Pfam Zn-finger in Ran binding protein and others 161 190 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0477 Lele-ChrLele37 3938964 3940785 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0818 41 17887775 17892799 Lele37g0477 37 3938964 3940785 CCT
Lele42g0806 42 20947397 20954247 Lele37g0477 37 3938964 3940785 CCT
Lele37g0477 37 3938964 3940785 Lele38g0445 38 3622091 3622713 ECH
Lele37g0477 37 3938964 3940785 Lele37g0477 37 3938964 3940785 ECH
Lele37g0477 37 3938964 3940785 Lele39g0948 39 18351199 18352992 hybridization