Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0370 ATGGAAGTGCCTGAATATTTTGTCGGTGCCTACTTCGGCTCCGGAGGGGACCATTTCTCTCCGGAAAAGCGCCACTCCGACCAGAAGCCCGCCGAGCCTTTTGCCGTTGACGACCTCCTCGACTTCTCCCATGCCGACGCTATCATGTCCGATGCTTTCATTCATAATGTCGCCGGGAACTCCACTGACTCCTTTACTGGAACTGCTGTTAATAGCTGCAACTCCTCAATTTCCCGTGTCGACAACCGTTTCTCCTCCAACTTTGGTCCTCGTCCCTTAGGCGATCATCAGTTATCCGGTGAACTCTGTGTGCCGTATGATGACATGGCAGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCGTTCCCCGCACAAGACGAGCTGAAAACACTCCACCTTCTATCCGGCGACACCACCGCTTCCGCATTTGGCGCCAAACCTCAGACTCCAGAATCTTCCTCCTCTTCTGAAACCCTCCCGCCTTTCGCTCCCGATGCAGCTCGGAACGCACCGTTTTTCCGTCCGGAAACTCCATTACCAGGCAAAGCTCGGAGCAAGCGTTCACGCGCCGCTCCTGGCGATTGGTCCACGCGCTTCCTCCATCACGTGACACCAGCACCGCACAACCAGACGGCCACGACGGAAGCCAAACCAGTGCAAGCTAAGGCGACGACAGTGAAGAAGAGGGAGAGTTCAAATTCCGATTCCTCGGGGAGGAAATGCCTGCACTGTGCCGCCGAGAAGACGCCGCAATGGCGAACGGGACCCATGGGTCCGAAGACGCTGTGCAATGCCTGTGGAGTGAGGTACAAGTCCGGGAGGCTGGTGCCGGAGTATCGACCGGCGGCAAGCCCGACGTTTGTGTCGACGAAGCACTCGAATTCTCATAGGAAGGTCCTGGAGCTGAGGAGGCAGAAGGAGATGCAAAGGCATCAGCAGCAACATCTGATTAGTCAAGCATCCATTTTCGGCGTATGCAACGGTGGAGATGAGTTCTTGATCCATCCCCACGGTGGGCCCGACTATAGGCACATCATCTAG 1044 0.5594 MEVPEYFVGAYFGSGGDHFSPEKRHSDQKPAEPFAVDDLLDFSHADAIMSDAFIHNVAGNSTDSFTGTAVNSCNSSISRVDNRFSSNFGPRPLGDHQLSGELCVPYDDMAELEWLSNFVEDSFPAQDELKTLHLLSGDTTASAFGAKPQTPESSSSSETLPPFAPDAARNAPFFRPETPLPGKARSKRSRAAPGDWSTRFLHHVTPAPHNQTATTEAKPVQAKATTVKKRESSNSDSSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKEMQRHQQQHLISQASIFGVCNGGDEFLIHPHGGPDYRHII 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0370 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Lele37g0370 347 CDD ZnF_GATA 241 288 IPR000679 GO:0006355|GO:0043565
Lele37g0370 347 PIRSF Txn_fac_GATA_plant 18 326 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele37g0370 347 SMART GATA_3 236 286 IPR000679 GO:0006355|GO:0043565
Lele37g0370 347 ProSitePatterns GATA-type zinc finger domain. 242 267 IPR000679 GO:0006355|GO:0043565
Lele37g0370 347 MobiDBLite consensus disorder prediction 208 222 - -
Lele37g0370 347 ProSiteProfiles GATA-type zinc finger domain profile. 236 272 IPR000679 GO:0006355|GO:0043565
Lele37g0370 347 MobiDBLite consensus disorder prediction 208 240 - -
Lele37g0370 347 MobiDBLite consensus disorder prediction 223 237 - -
Lele37g0370 347 FunFam GATA transcription factor 231 317 - -
Lele37g0370 347 Pfam GATA zinc finger 242 275 IPR000679 GO:0006355|GO:0043565
Lele37g0370 347 MobiDBLite consensus disorder prediction 142 161 - -
Lele37g0370 347 MobiDBLite consensus disorder prediction 142 195 - -
Lele37g0370 347 Gene3D - 236 286 IPR013088 GO:0006355|GO:0008270
Lele37g0370 347 PANTHER GATA TRANSCRIPTION FACTOR 24 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0370 Lele-ChrLele37 3113964 3115233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0370 32 347 C2C2-Gata Transcription Factor Family AT4G32890 43.844 1.03e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele37g0370 GATA 2.1e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0370 37 3113964 3115233 Lele37g0370 37 3113964 3115233 ECH
Lele37g0370 37 3113964 3115233 Lele39g1057 39 19183082 19184352 hybridization
Lele37g0370 37 3113964 3115233 Lele40g0326 40 2691100 2692387 hybridization