LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele37g0361	ATGCCGGTACTGCGTAGTGGAGTGCGCAGGGGCCGGGCAGCAGCAAAGAAACAGCAGCAGCAGCAACCTAATCCATTGATCGAGGAAGGGGAAGCAATTGCAGCAAGAACAAGGGGGAGGCGGGCGGCGGCGGCGGCGGCTGAACCTAAGGCTAACAAACAACAGAAGCAGGCGGTGGTCGATGAGAAGGTAGCTGTACCGGTGAAGGAGGACGAGATCAAGGGTGTGAACGAAGCTATTCGTGTTGGTGAAGCTGCTGCTGGTGGAGAGGAGAGAGAGGAGGTTGGGGAGAAGCAGATGGATGACTACGATAGTGGAGCCCGGAGCAATGATAAGGGCAATGCCGGTGAAGATGAGGGGAGCACCGCTCCGCTCCCTGAGAAGGTTCAAGTTGGTGGTTCCCCTATGTATAAAATTGAGAGAAAACTGGGTAAGGGTGGTTTTGGACAAGTATATGTGGGTCGACGAATTTCTGGTGTAAATATGAATGAGAGAACTGGACCTGGAGCTGTAGAGGTTGCCCTAAAATTTGAGCATAGAAGTAGTAAAGGATGTAATTATGGACCGCCATATGAGTGGCAAGTGTACAACAATCTTGGTGGAAGTCATGGTGTGCCACGGGTACACTACAAGGGAAGGCAAGGTGACTATTATATCATGGTTATGGATATGTTGGGACCTAGTCTGTGGGATGTTTGGAATAATAACTCTCACACAATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCTATATTGGAAAAGATGCACTCTCGAGGGTTTGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCCGGGACCCCTGATGAAAAGAAGCTGTTTCTTGTTGATCTTGGATTAGCTACTAGATGGAGGGATAGTACAACGGGTATGCATGTGGATTATGACCAACGCCCAGATGTTTTCAGGGGTACTGTTCGCTATGCTAGTGTGCATGCACACTTGGGAAGAACGGGAAGCAGGAGGGATGATCTGGAATCACTTGCTTACACATTGATTTTCCTTCTTCGAGGTCGTCTCCCTTGGCAGGGGTATCAGGGAGAGAACAAAGTGTTTCTTGTTTGCAAGAAGAAGATGGGAACTTCTCCAGAGAGCCTATGTTGCTTCTGCCCCCAGCCTTTTAGACAGTTTGTTGAACATGTGGTGAACTTGAAGTTCGATGAAGATCCTAACTATGCAAAATATATTTCTCTGTTCGATGGCATAGTTGGTCCAAATCCAGATATTAGGCCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGTCGGTTGGCCATGGAAGAAGAGGATGATGAACAACCTAAAAAGAAGATACGCATGGGTATGCCAGCAACACAATGGATAAGTGTTTACAATGCTCGCAGACCAATGAAACAAAGATATCATTACAATGTGGCAGATACAAGACTGTCCCAGCACATTGAGAAAGGAAATGAGGATGGGTTATATATTAGCTGCGTGGCTTCATTTCAGAACCTGTGGGCCCTAATCATGGATGCAGGAACGGGTTTTACTGCCCAGGTTTATGAACTCTCTCCCTATTTTCTCCACAAGGAATGGATAATGGATCAATGGGAAAAAAATTACTATATAAGTGCAATAGCTGGAGCTACAAATGGGAGTTCGTTAGTAGTGATGTCTAAGGGCACACAGTTTGTACAGCAATCCTACAAAGTGAGTGATTCATTTCCATTCAAGTGGATAAACAAAAAATGGAGGGAGGGCTTTTATGTCACTGCAATGGCCACTGCGGGTAGCAGATGGGCAGTTGTTATGTCTCGTGGTGCAGGATTTTCTGATCAGGTGGTTGAACTAGATTTCCTTTATCCCAGTGAAGGGATTCACAAACGATGGGATTATGGATACCGTATCACAGCAACCGCAGCAACTTGGGATCAAGCCGCATTTGTTCTCAGTGTGCCTAGGAGAAAACCTGCGGATGAAACACAGGAAACACTTAGAACTTCGTCTTTTCCTAGTGTACATGTCAAGGAGAAGTGGGCAAAGAACCTGTATATTGCATCTATTTGCTATGGAAGAACAGTTTCATGA	2106	0.4601	MPVLRSGVRRGRAAAKKQQQQQPNPLIEEGEAIAARTRGRRAAAAAAEPKANKQQKQAVVDEKVAVPVKEDEIKGVNEAIRVGEAAAGGEEREEVGEKQMDDYDSGARSNDKGNAGEDEGSTAPLPEKVQVGGSPMYKIERKLGKGGFGQVYVGRRISGVNMNERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNNLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGFVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDSTTGMHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKVFLVCKKKMGTSPESLCCFCPQPFRQFVEHVVNLKFDEDPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADTRLSQHIEKGNEDGLYISCVASFQNLWALIMDAGTGFTAQVYELSPYFLHKEWIMDQWEKNYYISAIAGATNGSSLVVMSKGTQFVQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAVVMSRGAGFSDQVVELDFLYPSEGIHKRWDYGYRITATAATWDQAAFVLSVPRRKPADETQETLRTSSFPSVHVKEKWAKNLYIASICYGRTVS	701

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele37g0361	701	CDD	STKc_CK1	136	413	-	-
	Lele37g0361	701	ProSitePatterns	Protein kinases ATP-binding region signature.	143	176	IPR017441	GO:0005524
	Lele37g0361	701	MobiDBLite	consensus disorder prediction	1	60	-	-
	Lele37g0361	701	PANTHER	CASEIN KINASE-RELATED	131	664	-	-
	Lele37g0361	701	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	264	276	IPR008271	GO:0004672\|GO:0006468
	Lele37g0361	701	MobiDBLite	consensus disorder prediction	84	132	-	-
	Lele37g0361	701	SMART	serkin_6	137	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele37g0361	701	ProSiteProfiles	Protein kinase domain profile.	137	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele37g0361	701	FunFam	casein kinase 1-like protein HD16	110	457	-	-
	Lele37g0361	701	SUPERFAMILY	Protein kinase-like (PK-like)	137	417	IPR011009	-
	Lele37g0361	701	Pfam	Protein kinase domain	137	371	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele37g0361	701	MobiDBLite	consensus disorder prediction	85	115	-	-
	Lele37g0361	701	Gene3D	Transferase(Phosphotransferase) domain 1	103	460	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele37g0361	Lele-ChrLele37	3055597	3060495	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele37g0361	232	413	MAP Kinase Kinase Kinase	AT5G50180	26.316	6.34e-09	56.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Lele37g0361		Pkinase	4.1e-17	CL0016