Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0353 ATGATGAACAGAACTGCTCCTGTGGGTTGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAACAACAACAGCATTTCTAAGACAGCTAATGAGACACAACAGCGGCATGATGTTGCAGACAAGGTTGTCGGGAAGAAGCCTGTTGTTGACAACGTTGGTAATAAAGGTTTGTTTGTGAAGATCAACATGGATGGAGTTCCTATAGGGAGAAAAGTGGACCTTAATGCTTATAACTGCTATGAAAACCTCTGCTCTGCAGTTGATCAACTCTTCAGATGCCTCCTCGCTGCTCAAAGAGATTCCGGTGCTGGAGGAATCAAGAACAAGGAAGAGGAAGAAGAAAAGGCTATAACAGGTTTATTGGATGGAAGTGGGGAATATACTCTTGTTTATGAGGACAATGAAGGAGACAGGATGCTCGTTGGGGACGTGCCATGGCACATGTTCGTATCAACTGTGAAGAGGCTGCGTGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGTAACAAGCAAGGCAAGAAAACCACTTGA 543 0.4457 MMNRTAPVGWPPIRSFRKNLASNNNSISKTANETQQRHDVADKVVGKKPVVDNVGNKGLFVKINMDGVPIGRKVDLNAYNCYENLCSAVDQLFRCLLAAQRDSGAGGIKNKEEEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGNKQGKKTT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0353 180 ProSiteProfiles PB1 domain profile. 58 163 IPR000270 GO:0005515
Lele37g0353 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 166 IPR003311 GO:0005634|GO:0006355
Lele37g0353 180 SUPERFAMILY CAD & PB1 domains 52 160 - -
Lele37g0353 180 Pfam AUX/IAA family 7 168 IPR033389 -
Lele37g0353 180 FunFam Auxin-responsive protein 53 175 - -
Lele37g0353 180 Gene3D - 53 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0353 Lele-ChrLele37 2938337 2940003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0353 61 174 B3 DNA Binding Superfamily AT4G23980 34.211 1.36e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele37g0353 AUX_IAA 1.1e-62 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0353 37 2938337 2940003 Lele38g0336 38 2675411 2678277 ECH
Lele37g0353 37 2938337 2940003 Lele37g0353 37 2938337 2940003 ECH
Lele37g0353 37 2938337 2940003 Lele39g1073 39 19339271 19342176 hybridization
Lele37g0353 37 2938337 2940003 Lele40g0316 40 2549403 2550937 hybridization