Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0307 ATGAACATCTCTCGAAACAACACCAACAACAACGTTAACAACAACAATAACCAGGCTTGTGCTGCTTGTAAGTACCAACGTAAGAAATGCGCTCCTGACTGTATTCTCGCACCTTATTTCCCTCACTATCGCCAACGTCAATTCCTTAACGCCCATAAATTGTTCGGTGTCAAAAAGATCACCAAAATCATCAAACACCTTGACCCCCACGATAAGGATCAAGCCATGCGATCCATCATGTATCAATCCGACATGCGAGCTAACGACCCCGTCGGAGGTTGTTACAGACACATTCTAGAGCTTCAGGCTCAGATCAAATACCATCAAGCCGAGCTGGAGCTTGTTCTTCAACAGCTCGCAGTTTTCCAATCCCAAGCTCACCTTCATCATCATCATCATCATCATTTGAATCTTTATAATAACCCTAATAATAATATTGCACCAGTAGTAGCTCCCAGTACTCATCATTATCAATACCTTCAACAAGAGCCGTACATGATGTCGCAGGAACATCAGATCAGTGATGTTTCTTTGCAGGATGATATTAGTAGTGCATGTTGGGCTGTGCAGGATTCTGGGTCTTTGTCGTCTTTATCGTTACAGAACAAGAATACTGGGGATGATATTTATGTGGGTGATGAATTATATAATGATCAAAAGTCTTCGTCTACATCTTTGCTTGACATTCATTGTGATGATGAGAGGAATGAAATCGGTTTTGAACCTCAAGAATTAGTGGATCGCAGTGATGAAGGGGTTTTGTTTAAGATAGAGAATGCAGTATTAAAAGCAGAGGCTGATCGCATTGAACAAGATCAAGATCATGATCTCAAAGGTGCTGCAACTTTGTTCACTCTCACAAACTGTACTGCCTGA 876 0.4144 MNISRNNTNNNVNNNNNQACAACKYQRKKCAPDCILAPYFPHYRQRQFLNAHKLFGVKKITKIIKHLDPHDKDQAMRSIMYQSDMRANDPVGGCYRHILELQAQIKYHQAELELVLQQLAVFQSQAHLHHHHHHHLNLYNNPNNNIAPVVAPSTHHYQYLQQEPYMMSQEHQISDVSLQDDISSACWAVQDSGSLSSLSLQNKNTGDDIYVGDELYNDQKSSSTSLLDIHCDDERNEIGFEPQELVDRSDEGVLFKIENAVLKAEADRIEQDQDHDLKGAATLFTLTNCTA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0307 291 Pfam Lateral organ boundaries (LOB) domain 19 115 IPR004883 -
Lele37g0307 291 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 155 - -
Lele37g0307 291 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0307 Lele-ChrLele37 2582706 2585918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0307 18 219 AS2 family AT3G13850 48.131 5.26e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele37g0307 LOB 4.2e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0984 41 19272500 19273076 Lele37g0307 37 2582706 2585918 CCT
Lele42g0948 42 22199131 22202232 Lele37g0307 37 2582706 2585918 CCT
Lele37g0307 37 2582706 2585918 Lele39g1117 39 19691391 19694657 hybridization
Lele37g0307 37 2582706 2585918 Lele40g0277 40 2210805 2211569 hybridization