Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0260 ATGGTGAGTTTGTTTTATGCTTTGGAGGAAGATGACATGCACTGTTTTATGCTTTATGAAGCTCATGATGTTGGAGCTGATCTTCTTCTGGGTTGGAAAATTAGTGCAGACTCGAGTTCATTCAATAGTTCAGGGTTTTCAACTCCCAGCCGCTAATGCTCATCGTGGAAAACATTATCTGGATTTCATAGACAAGAATCACCTGTGTCCAAAAGTTTGAGCTTAAAAATGGGAGTTCTTCCACAACAATGTCTTAATACTAAGCTGTTTAGTTTTCCATTTCAAGAACGGGACTCGTCTTCAACCCAACCAACTGATCAATCTTATCCTAAAGGTGATTCAGCAAACTCAGGTCAATTTTCTATGCAATATAGCAGTTCTTCTGCTCATTCAAGCAGAACTGAGGGAAAGTCCTTGGGAGGTCTCATCAGGTCATCTGTAGGGATGCAGGATTTTGCCTTTCCTCCTTCACTTCTGGATCATAACAATTCAATTATTCATCATGCTCAACTAATGGGAATGGCTCCTCTTCGAGTTCCACTTCCACTTGACTTCACAGAAGAACCTATATTTGTGAATGCAAAACAATACCACGCGATTCTGAGGCGAAGGCATTACCGATCAAAACTCGAATCACAGAACAAGCTCAACAAAACTCGGAAACCATATCTTCATGAGTCTCGTCACCTACATGCATTGAAGAGAGCCAGAGGTTCTGGGGGACGCTTTCTTAACTCCAAAAAGCTCAAAGAATCATCATCAGAACTACATTCAGCAAGCCAATTTACTACTCCAGACTCTGAATTTCTTGGGTTAGAAAATTGCAGAGACATCACATGTTCTGATGTGACGAGTGCTTGGAACAGCGACAACGTCTTCCAGCAGCAACATGAATCAAATTCGAGGTTGTGTGGAAGATATCCTTCTCACATTGGAATCAATATGCAAAGTTTCTCAGTTGATACGGGTGGTGGTGATGAGAATCAGCATCGTGTATCTCTCTTCATGTGA 1011 0.4144 MVSLFYALEEDDMHCFMLYEAHDVGADLLLGWKISADSSSFNSSGFSTPSRXCSSWKTLSGFHRQESPVSKSLSLKMGVLPQQCLNTKLFSFPFQERDSSSTQPTDQSYPKGDSANSGQFSMQYSSSSAHSSRTEGKSLGGLIRSSVGMQDFAFPPSLLDHNNSIIHHAQLMGMAPLRVPLPLDFTEEPIFVNAKQYHAILRRRHYRSKLESQNKLNKTRKPYLHESRHLHALKRARGSGGRFLNSKKLKESSSELHSASQFTTPDSEFLGLENCRDITCSDVTSAWNSDNVFQQQHESNSRLCGRYPSHIGINMQSFSVDTGGGDENQHRVSLFM 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0260 336 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 188 243 IPR001289 GO:0003700|GO:0006355
Lele37g0260 336 MobiDBLite consensus disorder prediction 96 139 - -
Lele37g0260 336 Gene3D - 186 247 - -
Lele37g0260 336 SMART cbf3 185 246 IPR001289 GO:0003700|GO:0006355
Lele37g0260 336 ProSiteProfiles NF-YA/HAP2 family profile. 186 246 IPR001289 GO:0003700|GO:0006355
Lele37g0260 336 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 83 297 IPR001289 GO:0003700|GO:0006355
Lele37g0260 336 PRINTS CCAAT-binding transcription factor subunit B signature 189 211 IPR001289 GO:0003700|GO:0006355
Lele37g0260 336 PRINTS CCAAT-binding transcription factor subunit B signature 220 243 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0260 Lele-ChrLele37 2063322 2066857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0260 94 259 CCAAT-HAP2 Transcription Factor Family AT1G54160 45.226 4.13e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele37g0260 CBFB_NFYA 1.2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0260 37 2063322 2066857 Lele37g0260 37 2063322 2066857 ECH
Lele37g0260 37 2063322 2066857 Lele39g1166 39 20345646 20351449 hybridization
Lele37g0260 37 2063322 2066857 Lele40g0238 40 1888411 1894075 hybridization