Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0234 ATGATAAGTAGTGAAACAAGTAGTGTAAGAAATAGGTCTCCTTTCACAGCAATTCAATGGCAAGAACTTGAACAACAAGCTCTTATCTTTAAATACCTGGTCTCAGGGAGCCCCATCCCACCTGATCTCATTTACTCTGTCAAAAGAAGCCTAGATTCTTCTTCAGTGTCTTCTTCTTCATCTTCAAGGCTCTTCCCCTTCCATCCAATTGGATGGGGATGCCTAGAAATGGGATATGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAAGAAGCCTATCTGGACTCAAAATACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCTTCAACAACTGGCATTTCAACAAACACTTCACAGCCAATCTCTTCACCATATACTAGTAACAGAGGCCTTAGCATGAGCAATCCCAATCCACCCTCAACAACTTCTTCTTTCCCTTTCTCTCTATTGTCCTCTGATTCCCAACCTTATTCCCATATCTACCAAAATTCTTCTCTTAATCCCTTGTTCTACACCCATTCAACCTCATGTAGACCTCCTGATTCTGATTTTCCTTCCCAAAAAAGCAATACCCACCAGCTATTTTCAGACTCTGGATCTTATTCTAGGAATGAGGACTATAGGCATATTCATGGAATGAGGGGAGGTGTGGATGAGAGAGCTTTCTTCCCAGAAGCCTCAGGGAGTGTTAGGAGCTTTCCTGAATCATATCAACAATTACCAATGAGCTCCCAGTTCCAGAACATGAATGATGATCCAACTCCAAGACAACAAGGAGAGCAGCATTGCTTTGTTCTGGAAAGAGACTTCAAATCAGAAGGACAAATAAAACATGAGAATGAAACTGATATGAGCCAGAGATCATCCCTTCATCATTTCTTTGGTGAATGGCCTCCAAAGAACACAGATTCCTGGCTTGATCTTGCTTCAAATTCCAGAATCCCCTCTGGTAGTGTTCTATTATCCATAGCTTCCTCTTCAATGTTTATCTATATAATTCATTTAATTTATTTAGCCTCCTCCTTTCCTGGGCAGATGAATGATCCAAGACTCATAAGAGAAATGCTGCAGATAGAAGAACTTATTATGGCTGGGGTAGGTTTCCTTTGA 1173 0.416 MISSETSSVRNRSPFTAIQWQELEQQALIFKYLVSGSPIPPDLIYSVKRSLDSSSVSSSSSSRLFPFHPIGWGCLEMGYGRKVDPEPGRCRRTDGKKWRCSKEAYLDSKYCERHMHRGKNRSRKPVEISSTTGISTNTSQPISSPYTSNRGLSMSNPNPPSTTSSFPFSLLSSDSQPYSHIYQNSSLNPLFYTHSTSCRPPDSDFPSQKSNTHQLFSDSGSYSRNEDYRHIHGMRGGVDERAFFPEASGSVRSFPESYQQLPMSSQFQNMNDDPTPRQQGEQHCFVLERDFKSEGQIKHENETDMSQRSSLHHFFGEWPPKNTDSWLDLASNSRIPSGSVLLSIASSSMFIYIIHLIYLASSFPGQMNDPRLIREMLQIEELIMAGVGFL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0234 390 Pfam QLQ 14 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele37g0234 390 Pfam WRC 85 127 IPR014977 -
Lele37g0234 390 PANTHER GROWTH-REGULATING FACTOR 5 13 337 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lele37g0234 390 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele37g0234 390 ProSiteProfiles WRC domain profile. 84 128 IPR014977 -
Lele37g0234 390 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele37g0234 390 MobiDBLite consensus disorder prediction 197 222 - -
Lele37g0234 390 MobiDBLite consensus disorder prediction 125 168 - -
Lele37g0234 390 MobiDBLite consensus disorder prediction 197 224 - -
Lele37g0234 390 MobiDBLite consensus disorder prediction 116 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0234 Lele-ChrLele37 1821249 1822603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0234 1 317 GRF Transcription Factor Family AT3G13960 36.480 2.18e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele37g0234 WRC 4.5e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0234 37 1821249 1822603 Lele37g0234 37 1821249 1822603 ECH
Lele37g0234 37 1821249 1822603 Lele39g1191 39 20614944 20616198 hybridization
Lele37g0234 37 1821249 1822603 Lele40g0221 40 1719277 1721818 hybridization