Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0187 ATGATGTTTCATCCTGGAGGAATTCCCAAGCAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAGCTTTGAGCATGAGTTCGACAAGAAACTCACTCAGAATCAGCTCAAATATCCCTTTCCCGAGTTAACTTCTTCAGGGCGTCTGGAGGTTCAAACTCTAAACAATCCAGAAAAAGAACAGTTTCGAAAAGTTCTCGAGTCTTATCAACCAAATTTTGTATATTTGCAAGGAGAACAGCTTGCAAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGCGAAGAATTGGCTACCTCGGAAGCTATATCAGAGCTCTTTGGTCCCACATTGCCAACAGCTGTATACTTGGAAATCCCAAACGGGGAAAATTTGGCAGAAACTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAAAGCGCTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGCTCTTCTACGCATACATGGGATGCCTTTCACCTTGCCCGTGCTTCTTTTGAGTTTTATTGTGTTCAAAACAATCAAGTTCTTCCTGGTGAGAAACATGATTCTAGTGACAATATAGGGCCACACCTTCTTGGAGATTGTCTTCAAATCAATATTGACCCTCCTGAGGTGTGTGAAGATGATGAGGAAAGTTCCTCGGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTTAGGTTTCTCATCTGTGGTTCACCTTCAATTGTGGACGAGTCACTATTGAGATCATTGGAGGATGGACTCAAAGCACTCTTAACCATTGAAATACGGGGTAGCAAACTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCAACTTGTAGTTCAGCCCACATCTCACTTCTGGTGTCTGGTAGTGCTCAAACTTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCGTGCCCAAATTGATGAGGGAAACAAACAGCATGTCTCTGAACCTCGAAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCATGAAGCTTCCTCTATGGGCTTCGCAGGTATTGAGACAGCTAGCTCCTGATATTACTTATCGAAGTTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTTGAGAAAGATGATGCCGAGCGCCTGCTTTTCTTTTATCAAAATCCAGAGAAAGATAGTGATGCAGACAAAATCATTTTCGGCAGCCCCCCTGGTTGGTTGAAACCACCCCCTCCCACTAGAAAAAAGTGTGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGTGTTTTAACTGGGCAAGGTAGTATTCAAAAAGTAGATGAAGATGAAAAGGATACAAAAATGGTGAATGGAATTGGCACATCCTTCACTCCAGCTAGGCAGAGACTAAAAGTGTCTGCAATGAGGCCCATCCCTCACGTTCATCGCCATAGAATGACACTCTTTTCTGGACCTTCTGAGACAGATGGTTATGATGGCGCCCAAGTTGAAGCTAGTTTACCACTTGTTGTCCCTGCAAAGCGCAGTAATACTGGTTCAGGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACACGGTTGTGGCAGAGGCCAGATCCAAACTTGCTCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACACAATCGATTAATTCCTCAAGGTGGTCTAGCTGAGTTTCCTGATGCCATACTCAATGGGAAACGGCTTGATCTCTACAACTTATATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGTAATGGCATCAATTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCGCAGTAGCGCGGCTGGGGATTGGGTGAACTGTGGCATATGTGGCGAGTGGGCCCACTTTGGCTGTGACAGACGGCAAGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATTTGTCCTCATTGTAGCGTAACAAATTTCAAGAAGAAACCCTCAGGTATTGCTAATGGGTTTTCTCAGGGGTCATTGGCATCAAAACCCCTTTGA 2346 0.4344 MMFHPGGIPKQTCSLLAVTCGKSFEHEFDKKLTQNQLKYPFPELTSSGRLEVQTLNNPEKEQFRKVLESYQPNFVYLQGEQLANGEVGSLVWQGEELATSEAISELFGPTLPTAVYLEIPNGENLAETLHLKGVAYVIYWKSAFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQVLPGEKHDSSDNIGPHLLGDCLQINIDPPEVCEDDEESSSGSLPAIKIHDDEVNFRFLICGSPSIVDESLLRSLEDGLKALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLVRAQIDEGNKQHVSEPRRSASIACGAAVFEVCMKLPLWASQVLRQLAPDITYRSLVALGIASIQGLPIASFEKDDAERLLFFYQNPEKDSDADKIIFGSPPGWLKPPPPTRKKCEPSQEASPGLQDGVLTGQGSIQKVDEDEKDTKMVNGIGTSFTPARQRLKVSAMRPIPHVHRHRMTLFSGPSETDGYDGAQVEASLPLVVPAKRSNTGSGSATQRRSFSGSAQSKQIISLNPLPLKKHGCGRGQIQTCSEEEFLKDVMEFLMLRGHNRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPSGIANGFSQGSLASKPL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0187 781 CDD PHD_ARID4_like 704 755 - -
Lele37g0187 781 CDD ARID 596 694 - -
Lele37g0187 781 Gene3D - 588 699 IPR036431 GO:0003677
Lele37g0187 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Lele37g0187 781 SMART ARID_2 591 694 - -
Lele37g0187 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 756 IPR013083 -
Lele37g0187 781 SMART bright_3 595 699 IPR001606 GO:0003677
Lele37g0187 781 MobiDBLite consensus disorder prediction 549 570 - -
Lele37g0187 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Lele37g0187 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 775 IPR042293 -
Lele37g0187 781 SUPERFAMILY ARID-like 594 708 IPR036431 GO:0003677
Lele37g0187 781 SUPERFAMILY FYVE/PHD zinc finger 690 757 IPR011011 -
Lele37g0187 781 MobiDBLite consensus disorder prediction 436 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0187 Lele-ChrLele37 1498639 1505307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0187 2 770 ARID Transcription Factor Family AT3G43240 60.258 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele37g0187 ARID 1.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0187 37 1498639 1505307 Lele39g1235 39 20953085 20959734 hybridization
Lele37g0187 37 1498639 1505307 Lele40g0185 40 1453405 1459980 hybridization