Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0173 ATGGGTGGCTTGGCAGGAACAGATGACAATATGCGTGACTCTCCGGGGTTGGAATTGACCGGAAAGATCATGGTTATAGCTATAATATTCCTCTTTTTCGTGATTGTGGTAGTGTGGTTCGTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGAAAGAAGCAGCACCACCCCCACCCCCACAGCGGCCGCCGTCGCCGCCGTCGGTTTGTCTTCACTCCAGGTCAAGACCCCGCTATCTACGGCGTTCAGAGACGTGGACTTGACCCAGAACGAGCTTGTTGATGGAGAAAAAGCAAGGATATTACCCAAATGCAATCATGGGTTTCACGTAGAATGTGTTGATATGTGGTTCCAATCCCATTCTACCTGTCCACTTTGCAGGAACCTGGTCGCTTCTGAGTCCTCTGAATCCATTTACAGTTCAGGTGTTCGAGGAGATGTCTCAGACAATTCTAGTCAGTCATCATCAGACTCAGAAAGTTCAGATGCTATAAGCGAGGCAGATTTAGAGTCTCCAAATCTCCCCACAAATGTGTTGATTTGGGGAAATCAGACCCAAGTAAATTCTGTTGGCCCTGGTCCTTCTATTCAGGCACCTTCTTCCTCATCATCATCAGCGGCAGCAGATAATTGTAGCAGTAGTAACAATAACCATAGACGTAATGGAATGTTGGTGATTGACATACCAAGAGAGATGAATCCATCATCTTTACCTTCAACTAGCAGGTGTGCTGAAGATGATTTGAAGTCACCAATGACATCTAGACTCAAGTCATTCACAAGGATGTTAAGCATGAAGTTCAGTCCTCGTGGTCCTGGTTCTGTAGATGTGGAACAAGCAGGGAGAGGACAGAGCTAA 864 0.4664 MGGLAGTDDNMRDSPGLELTGKIMVIAIIFLFFVIVVVWFVHLYAKWFWWSIERSSTTPTPTAAAVAAVGLSSLQVKTPLSTAFRDVDLTQNELVDGEKARILPKCNHGFHVECVDMWFQSHSTCPLCRNLVASESSESIYSSGVRGDVSDNSSQSSSDSESSDAISEADLESPNLPTNVLIWGNQTQVNSVGPGPSIQAPSSSSSSAAADNCSSSNNNHRRNGMLVIDIPREMNPSSLPSTSRCAEDDLKSPMTSRLKSFTRMLSMKFSPRGPGSVDVEQAGRGQS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0173 287 Pfam Ring finger domain 92 129 IPR001841 -
Lele37g0173 287 MobiDBLite consensus disorder prediction 267 287 - -
Lele37g0173 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 167 - -
Lele37g0173 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 133 IPR013083 -
Lele37g0173 287 MobiDBLite consensus disorder prediction 142 171 - -
Lele37g0173 287 MobiDBLite consensus disorder prediction 187 222 - -
Lele37g0173 287 MobiDBLite consensus disorder prediction 235 253 - -
Lele37g0173 287 SUPERFAMILY RING/U-box 92 133 - -
Lele37g0173 287 CDD RING-H2_EL5_like 92 129 - -
Lele37g0173 287 MobiDBLite consensus disorder prediction 234 253 - -
Lele37g0173 287 ProSiteProfiles Zinc finger RING-type profile. 106 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0173 Lele-ChrLele37 1426371 1427311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0173 16 268 C3H Transcription Factor Family AT1G53820 34.483 1.28e-42 146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0173 37 1426371 1427311 Lele37g0173 37 1426371 1427311 ECH
Lele37g0173 37 1426371 1427311 Lele39g1248 39 21032569 21033510 hybridization
Lele37g0173 37 1426371 1427311 Lele40g0175 40 1389738 1390673 hybridization