Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0157 ATGGAATTGACGCGAGAAGCTGCAAATAAAGGGTATTCTGATCATAGCAGAGAAGAAGAATTAGTGGATGAGGAAGAGGATTTAGCTGAAACCTGTAATAAAGAAAGCAGTAAGCAATACTATCCCTTTTTTTCTTCTTCTTCACCTCCAAATCTGTGGTTGGGGATGCTTCATCAGCATCGTCATCGTCATCATCATCATCAACAATTTCCGGAGGCCACAACCCCTTGTGAATCTCACAATTCGTCATCTGTGTTAGGGTTACACCATCAGGATGCACCTTCTAATTCCAATTCCGCCATTAACAATCCCAACAAGAATCTAGACTTCATGGACCTATCGCTCGGGAACAAGGAAGAAGATGTAGCCAACAACAAACCTATCGAGAAAGAGCACATGTTTGATAAGGTTGTGACGCCGAGTGATGTCGGAAAACTGAACCGCCTCGTGATACCGAAACAGCACGCCGAGAGGTACTTCCCGCTCGATTCTTCCTCCAACGAGAAAGGCCTTCTCTTGAATTTCGAGGACCGCAACGGCAAGCTATGGCGGTTCCGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTTATGACCAAAGGCTGGAGCCGTTTCGTTAAGGAGAAGAAGCTCGACGCCGGCGACATTGTATCCTTCCAACGCGGCCTTGGTGAATTGTATAGACATAGGTTGTACATAGACTGGAGGCGCCGGCCGGATTACGCCGCCACCGATCATCATCGCCATGCCGCCGCATTTACACCGTTACTCCTACCAAATCAGTATTCCATCAGATGGGACGGTAGATTATACTCAGTTCCCACGGTGGCGCCTCCACCACCACGACACCACGAGCATTTCCAGCAAGTGAACTGCAACAATTACCCCTTTCAGCAGCAACAACAGCACCATCTACTTCAGTACCAGCGACAACAACAACATCATCAGCACCATCATCATCACCATCACCATCACCAGCTCTATAGTGGAAGTCAAGGAAGCTATAATGAGCTGAATTTGGGATCTGAGTCGTCGCTTTACTACCTGAGGACGGCGTCAGAGTCTGCGGCGGCGTCGGGAGATCAGAATTTAATGAAGCAGCGAGAGGGAGGCATCAATGTAAGTCCGATGATAATCGATTCGGTTCCAGTAGTCCATGGAAAGAGCAGTTCAAGTAGTGGTAGAATTACTGATCCAACAGCAAAGAAGCTTAGGCTATTTGGGGTGAATATGGAATGTTCTTCGTCATCAAACACAGTAGGACATGTGCCAATGGCTACTGATTCCTCACTTTCCTCACCAAATCTTCAGTATTTGAGAGAATCCCATCATCATGAAGAACAAGACCCACTTTCTTCTACATCATCATCGTCAGCATCAATGTTTGCAGATCAAAAGGGGAAAACTTCTGTGCTTTTTGATCTGAGCCCGTCTTTCCAATACCGACACTAG 1452 0.469 MELTREAANKGYSDHSREEELVDEEEDLAETCNKESSKQYYPFFSSSSPPNLWLGMLHQHRHRHHHHQQFPEATTPCESHNSSSVLGLHHQDAPSNSNSAINNPNKNLDFMDLSLGNKEEDVANNKPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPDYAATDHHRHAAAFTPLLLPNQYSIRWDGRLYSVPTVAPPPPRHHEHFQQVNCNNYPFQQQQQHHLLQYQRQQQHHQHHHHHHHHHQLYSGSQGSYNELNLGSESSLYYLRTASESAAASGDQNLMKQREGGINVSPMIIDSVPVVHGKSSSSSGRITDPTAKKLRLFGVNMECSSSSNTVGHVPMATDSSLSSPNLQYLRESHHHEEQDPLSSTSSSSASMFADQKGKTSVLFDLSPSFQYRH 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0157 483 MobiDBLite consensus disorder prediction 300 335 - -
Lele37g0157 483 FunFam B3 domain-containing protein 127 248 - -
Lele37g0157 483 ProSiteProfiles B3 DNA-binding domain profile. 134 239 IPR003340 GO:0003677
Lele37g0157 483 Gene3D - 128 250 IPR015300 -
Lele37g0157 483 MobiDBLite consensus disorder prediction 1 18 - -
Lele37g0157 483 CDD B3_DNA 132 221 IPR003340 GO:0003677
Lele37g0157 483 SMART B3_2 134 239 IPR003340 GO:0003677
Lele37g0157 483 MobiDBLite consensus disorder prediction 1 34 - -
Lele37g0157 483 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 432 IPR044800 GO:0003700
Lele37g0157 483 MobiDBLite consensus disorder prediction 441 462 - -
Lele37g0157 483 MobiDBLite consensus disorder prediction 310 327 - -
Lele37g0157 483 SUPERFAMILY DNA-binding pseudobarrel domain 131 224 IPR015300 -
Lele37g0157 483 MobiDBLite consensus disorder prediction 63 104 - -
Lele37g0157 483 Pfam B3 DNA binding domain 134 238 IPR003340 GO:0003677
Lele37g0157 483 MobiDBLite consensus disorder prediction 72 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0157 Lele-ChrLele37 1287298 1288749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0157 112 419 RAV Transcription Factor Family AT2G46870 47.222 3.04e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele37g0157 B3 3e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0157 37 1287298 1288749 Lele37g0157 37 1287298 1288749 ECH
Lele37g0157 37 1287298 1288749 Lele39g1268 39 21203075 21204547 hybridization
Lele37g0157 37 1287298 1288749 Lele40g0163 40 1272957 1277485 hybridization