Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0144 ATGGAAGCTATTCTCTGCCTCACCCCACCTTCCTTCTCATCATCAAGAAACAAGCTTCAATTCGCAGCTTCAGCCAAACGGTTCCCTTCGTGCTCATCGTTGCTTCCTTCTTCGGTTTTTTCATTATCTCTCGGTGCTATCTTCTCTCCGCAGCCTGTCACTACGGACCCTTCGTCTTACTTTTCTCTATTGAAGGGGCGAAGCAGGAAATGTAGGGTTTGCACGGCTTTAGCGGTGGCTGATGAAGAAACGGTGCTTGCAGACGAAATTAACGGAGAAAAACATGTGGACGCAGAAAACGATGACGTTTCCCATGAGAGAGAACCAAGCAAAGTGGGAAGACCAAGTGAAGTATACGTTTGTAATCTTCCAAGGAGCTGTGACTCAACGCAGCTTCAGGATATGTTCAAGCCTTATGGAACTGTTCTATCTGCTGAGGTTGATCGTAATGATGAGACCGGTGAAAGTAGAGGATGTGGTTATGTCACAATGGGATCAGTAAACTCAGCAAAAAAAGCAGTTGCTGCATTGGATGGATCAGATGTTGGTGGGCGTGAAATGCGGGTTAGATTTTCAGCTGAGATGAATCCTGGAAGGAGAAATGCTGAGACGATGAACTCGTCACCCCAGAAAGTTATATACTATGAAACTCCTCACAAGTTGTATGTTGGCAATCTTGCTAGGGCTCTTAAACCTGAAGACTTATGGAATCATTTTCGAAGATTTGGGACTGTGGTTAGTGTAAGAATATTGCATGATCATAAAGTTGCGAATGGTCGCATTTATGCATTTATTTCCTTCCTTTCACGGTCAGAACGCGATGCAGCAATGTCTCTTCATGGAACTGAACTTCGTGGCCGTACTCTAGTAGTGAGAGAAGGCATAGAGAGGGCTGGGCCATAG 903 0.4518 MEAILCLTPPSFSSSRNKLQFAASAKRFPSCSSLLPSSVFSLSLGAIFSPQPVTTDPSSYFSLLKGRSRKCRVCTALAVADEETVLADEINGEKHVDAENDDVSHEREPSKVGRPSEVYVCNLPRSCDSTQLQDMFKPYGTVLSAEVDRNDETGESRGCGYVTMGSVNSAKKAVAALDGSDVGGREMRVRFSAEMNPGRRNAETMNSSPQKVIYYETPHKLYVGNLARALKPEDLWNHFRRFGTVVSVRILHDHKVANGRIYAFISFLSRSERDAAMSLHGTELRGRTLVVREGIERAGP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0144 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Lele37g0144 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 289 IPR000504 GO:0003723
Lele37g0144 300 SMART rrm1_1 220 292 IPR000504 GO:0003723
Lele37g0144 300 SMART rrm1_1 117 190 IPR000504 GO:0003723
Lele37g0144 300 CDD RRM_SF 221 292 - -
Lele37g0144 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Lele37g0144 300 PANTHER OS02G0815200 PROTEIN 50 292 - -
Lele37g0144 300 Gene3D - 216 294 IPR012677 -
Lele37g0144 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Lele37g0144 300 SUPERFAMILY RNA-binding domain, RBD 108 199 IPR035979 GO:0003676
Lele37g0144 300 Gene3D - 84 214 IPR012677 -
Lele37g0144 300 SUPERFAMILY RNA-binding domain, RBD 215 297 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0144 Lele-ChrLele37 1180349 1181860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0144 116 291 Eukaryotic Initiation Factors Gene Family AT4G34110 29.032 2.33e-12 65.5