Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0127 ATGGACGACCTCATCCTCTCCCCTTCTTCCCCCTCCTCCCTCCTCTCCTTCTCTCACTCTCCTCCTCCCCCCTCCTCCCCTCTCCAAACCAAGCTTCAATTCTTACTTCAGTCCCAGCCTCAGTCCTGGCTCTACGCCATTTTCTGGCAAACCTCCCACGACGACCGCAACCGCCTCCGCTTGTCCTGGGCCCATGGACACTTCCATGGCTCCGATCATCATCCCCGTCATAACAACAACATCAAAGGTCTTGAATCTCTCGTCGACGACAACCTTAATGACGCTGAGTGGTTCTACGTCATGTCCTTGACTCGCACTTTCTCCCTCGCTCCTGATTCCTCCTCCTCCTCCCTACCCGCCAAGGCTTTCTCCTCCGGTTCTCCCCTCTGGTTGAATATCACCCACCACGAGCTTCAGTTTCACTGCTGCGACAGAGCCAAAGAAGCTTTCCTGCATGGGATTCAAACCCTGATCTGTGTTCCCACCACTCACGGAGTTCTCGAAATGGGTTCCTCTGAAATCGTCCCCAAGAACTCCGGTCTCATCCAGCAAGTTAAATCTCTGTACGGCTCCTCGGATCTCTCCGCTATCATCTCACCCCCTAATAAGCAACCCAAACAGGTTGATTTCTTGGACGTCGACGAGACCATCTCTTTTGCCGACATGGGCATTATCGCCCGCGCACCGGAAGTAGAAGACGAGAAGCCGCCGGTCAATTCCTGTAGTAAATCCCGAAAGAAGGATCCCCGTCTGCACCTCAGGTCGTATGTGGATTCGGAGCATTCGCATTCGGATTCCGACGGTCCGATAATAGAGAAGACACCGCCCAGGAAGAGAGGAAGAAAGCCCGGGCTGGGTCGCGAGGCGCCGCTGAACCACGTGGAAGCCGAGCGGCAACGCCGGGAGAAGCTGAACCACAGGTTCTATGCGCTACGCGCCGTGGTCCCTCATGTGACGAGGATGGACAAGGCCTCGCTGTTATCGGACGCCGTCTCTTACATCAACGAGCTTAAAGCCAAGATCGAGAAGCTGGAGTCGCGGCTTCAGAGGGAGCCCACCTACACGAATAGTTGCAGGAAGGTGAAGCTGGAAGACACGATGGAATCGACGGTGGAGCAGGCCGGCCCCAGCGGGCGGGGCTTCAGGCTGGGGCTGGGCGGGCTGGAGGTCGACGTCAGGATCATAGGACCGGACGCGATGATCAGAGTTCAGTCGGAGAACAGGAACCATCCCGGAGCGAAGCTGATGGACGCGCTGCGGGACTTGGAGCTTAGGGTGCACCATGCGAGCATGTCATGCGTCAAGGACGTTATGCTTCAAGACGTCGTCGTTAAGATCCCTCAGGGCCTGAGAAGCGACGAGAGCTTGATTAAAGCCTCTATTCTCAGGAGACTGGATCAGTAG 1404 0.5641 MDDLILSPSSPSSLLSFSHSPPPPSSPLQTKLQFLLQSQPQSWLYAIFWQTSHDDRNRLRLSWAHGHFHGSDHHPRHNNNIKGLESLVDDNLNDAEWFYVMSLTRTFSLAPDSSSSSLPAKAFSSGSPLWLNITHHELQFHCCDRAKEAFLHGIQTLICVPTTHGVLEMGSSEIVPKNSGLIQQVKSLYGSSDLSAIISPPNKQPKQVDFLDVDETISFADMGIIARAPEVEDEKPPVNSCSKSRKKDPRLHLRSYVDSEHSHSDSDGPIIEKTPPRKRGRKPGLGREAPLNHVEAERQRREKLNHRFYALRAVVPHVTRMDKASLLSDAVSYINELKAKIEKLESRLQREPTYTNSCRKVKLEDTMESTVEQAGPSGRGFRLGLGGLEVDVRIIGPDAMIRVQSENRNHPGAKLMDALRDLELRVHHASMSCVKDVMLQDVVVKIPQGLRSDESLIKASILRRLDQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0127 467 MobiDBLite consensus disorder prediction 1 29 - -
Lele37g0127 467 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Lele37g0127 467 SMART finulus 294 343 IPR011598 GO:0046983
Lele37g0127 467 MobiDBLite consensus disorder prediction 1 16 - -
Lele37g0127 467 Coils Coil 327 347 - -
Lele37g0127 467 Pfam Helix-loop-helix DNA-binding domain 292 337 IPR011598 GO:0046983
Lele37g0127 467 Gene3D - 288 359 IPR036638 GO:0046983
Lele37g0127 467 PANTHER MYC 21 463 IPR045084 GO:0003700|GO:0006355
Lele37g0127 467 MobiDBLite consensus disorder prediction 228 290 - -
Lele37g0127 467 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 188 IPR025610 -
Lele37g0127 467 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 351 IPR036638 GO:0046983
Lele37g0127 467 CDD bHLH_AtAIB_like 286 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0127 Lele-ChrLele37 1056969 1058372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0127 28 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 34.644 1.02e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele37g0127 bHLH-MYC_N 2.2e-38 CL0161