Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0117 ATGGAGGACCCTGTTGAAACTTCATCAGGGAAGACATCTGAGAAAAGTGCCGTAGAAAATGGTTTGCTGAAAGAAAAACTCCATTCCCAAGATGATGACGACCAAGTTCTACATTGTCTGGAAACTCTACAGGATTTGTGTGAACAAAGTGATCTGCACAGGGAATGGCTGATTCTGGAGAATTACATACCAGTTCTTATCCTGATTCTCGGCGCCAAAAACCACCATGCCAGAACCCGCGCTCTAGCCATCCTTAACATGTTGGCAAAGGATAGTGATGATGCAAAGGAAAGAATTGCCAACATTGATAATGCAATTGTATCTATTGTTCATTCACTTGGACGCCGTGTGGGCGAAAGGAAGTTGGCAGTGGAATTACTGCTGGAATTATCCAAATATGATTTGGTGCTAGAGGAAATTGGGAAGGTTCAAGGTTGCATACTACTACTTGTGACTATGGTCAGCAGTGATGATGATAATGAAGCTGCCAGAAATGCAAAGGAGCTTTTGCAGAATCTTTCATACTCTGATAACAATGTTTTAAAGATGGCAAGGGCTAATTATTTCCACCATCTTGTACACCGTCTTTCCACAGGACCGGATGATGTGAAAATGGTTATGGCGAAAGCTCTTGCGGAAATGGAGTTAACCAACCTGAATAAAGCATCCTTGTTTGAAGGTGGTGTGCTGGGTCCTCTTCTGCATTTAGTTTCACATTCTGATATTCAAATGAAAACAGTGGCCATTACGGCTTTAAGGAACCTATCAAGTTTAAAGAAAAATGGACAGAAGATGATTCAGCAAGGTGTAGTACGCCCTATACTTGACCTTCTATTCCAGCCTGGCTTGCTATGCTTAAGTCTAAAGGAACACTTATCATCCATAATCATGCAACTCGCGGCTTCAACCGTGTCTAAAGATGGCCAGGCACCAACTTCATTATTGTTAGAATCTGATCATGAAGATGCTTTAAAACTCTTCTCTTTAATTAGTTTCACGACGCCCAATGTCCAGCAAAACATTTTACGGACCTTCTATGAATTGTGTCAGTCCCCATCAGCCTCAGTTATCAGGAGCAAGCTAATTAGAGAGTGCTCAGTTTTTGAAGTTTTGGTTCAGCTCTGTGAGCAGGAAAATCTAAACCTAAGGGCAAGTGCTGTGAAGCTATTTGCTTGCTTGGTAAGCGAAGAGGCCAGCATGCCGGAAAGCGAAAATCAGAAATGCGCTGAAGCTATGCTCCAGATCCTGAGATCTTCTTCAGATGAAGAGGAAATATCTTCTGCTCTGGGCATAGTACGTTATCTTCCAAAAGTTTACCAGCTCACACAGTGGCTTCTCGATGCTGGTGCACTTCCTATCATATATAATCATCTCCAAGATTGGAAGAACATAATAATAGATTGCCAAAAAAAGAGCAAGTTAATAGAGAATGCCACTGGGGCCTTGAGCCATTTCACTGTTTCAACAAACCCAGAATGGCAAAAGAGTGCTGCGGAAACTGGGGTTATATCTGTTCTAGTTCAGTTTCTTGCATGTGGAACCTCATCAACAAAACAAGAAGCTGCATCATCTCTAGCTGAATTCTCAAAGAATTCACTTTTTCTGAGCATGCCGGTATCAAAGCCGAAGAAGGGCCTTTGGTGTTGTTTCTCAGCTCCAGCACAAATTAGCTGCTTGGTTCATGGAGGAATATGCACTGTGAAGTCATCATTTTGCCTTGTTGAGGCTGATGCAGTGAAGCCATTAGTGAGGGCACTTGGGGAATCTGATCCAGGAGCTTCTGAGGCTTCTTTAGATGCATTATTGACATTAGTTGAAGGAGAAAGATTTCAAAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCTATACCAGTGATAATAAAATGTCTTAATTCCACATCTCATGGATTACAGGAGAAATCGTTACAAGCTTTGGAAAGGATTTTTCGGCTACTCGAGTTCAAACAGTTGTATGCAGCCTCAGCTCATATGCCTCTAGTTGATTTAACTCACAGGGGGAATGATAGTGTGAGATCTCTGGCAGCCAGAGTTTTGGCACATTTGAACGTGCTTCACTATCAGTCTTCTTATTTCTAA 2097 0.4206 MEDPVETSSGKTSEKSAVENGLLKEKLHSQDDDDQVLHCLETLQDLCEQSDLHREWLILENYIPVLILILGAKNHHARTRALAILNMLAKDSDDAKERIANIDNAIVSIVHSLGRRVGERKLAVELLLELSKYDLVLEEIGKVQGCILLLVTMVSSDDDNEAARNAKELLQNLSYSDNNVLKMARANYFHHLVHRLSTGPDDVKMVMAKALAEMELTNLNKASLFEGGVLGPLLHLVSHSDIQMKTVAITALRNLSSLKKNGQKMIQQGVVRPILDLLFQPGLLCLSLKEHLSSIIMQLAASTVSKDGQAPTSLLLESDHEDALKLFSLISFTTPNVQQNILRTFYELCQSPSASVIRSKLIRECSVFEVLVQLCEQENLNLRASAVKLFACLVSEEASMPESENQKCAEAMLQILRSSSDEEEISSALGIVRYLPKVYQLTQWLLDAGALPIIYNHLQDWKNIIIDCQKKSKLIENATGALSHFTVSTNPEWQKSAAETGVISVLVQFLACGTSSTKQEAASSLAEFSKNSLFLSMPVSKPKKGLWCCFSAPAQISCLVHGGICTVKSSFCLVEADAVKPLVRALGESDPGASEASLDALLTLVEGERFQSGSKVLAEANAIPVIIKCLNSTSHGLQEKSLQALERIFRLLEFKQLYAASAHMPLVDLTHRGNDSVRSLAARVLAHLNVLHYQSSYF 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0117 698 Gene3D - 7 116 IPR011989 -
Lele37g0117 698 Gene3D - 555 694 IPR011989 -
Lele37g0117 698 Pfam Armadillo/beta-catenin-like repeat 224 257 IPR000225 GO:0005515
Lele37g0117 698 SUPERFAMILY ARM repeat 22 688 IPR016024 -
Lele37g0117 698 Gene3D - 117 537 IPR011989 -
Lele37g0117 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 228 270 IPR000225 GO:0005515
Lele37g0117 698 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 698 - -
Lele37g0117 698 SMART arm_5 490 530 IPR000225 GO:0005515
Lele37g0117 698 SMART arm_5 258 301 IPR000225 GO:0005515
Lele37g0117 698 SMART arm_5 610 650 IPR000225 GO:0005515
Lele37g0117 698 SMART arm_5 437 487 IPR000225 GO:0005515
Lele37g0117 698 SMART arm_5 566 606 IPR000225 GO:0005515
Lele37g0117 698 SMART arm_5 217 257 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0117 Lele-ChrLele37 951677 954038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0117 24 698 U-box Gene Family AT1G76390 25.852 4.39e-42 162