Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0108 ATGGAAGCGAAACCCCACCAACCATGCGCAGCTTGCAGGATGCTTCGCCGGAGATGTGACCGCAACTGCCTCCTCGCTCCGTACTTCCCGGCCGACGAGCTTGACAAGTTCGCCGTAGTTCACAGAGTCTTCGGCGCCAGCAACGTCATCAAAATGATTCAGATGGTGGAGGAGACGAAGAGGGAGGACGCAGTGAAAGCTATAGTGTACGAGGCAATGGCGAGGGTGAGGGATCCAGTGTATGGCAGTGCAGGGGCTATACAGAGGCTGCAGAAGATGGTTCAACAGCTCAAGGTGGAGGTGGAAGCCATGAAAGCTAGGGTTTCAGAGGTGCAACAACAAAGAGACCAGTTGCTGATGAATATTAATCCTGGTTTTCCTCAGTTTCCCTTCAATGATAATTTGCAAGACCCTTTCTTTGAAGACTATTACGCTGCTTTTTCGTCAGACCCAATAATGGATCAGTTTCCTCTGCAAGGCGACTGGCTGTATTATATATTCGTGACATGGGGAACAGAAAGTGGGGGAATATTTAGAATTTCTGAAGGAACCAGCCAAGTCTTCTCCAAAGAATGGTTTGACCATGAAGTTGGAAAATGTGATTGGTTAGTTGGAATTGGTCCTGGAATGTTGCTTAGCTTATGGGCCATCCACTGTCGTGATGACCTCTCCTCCCTTAGATCTCCCCGAGTTAAGTTATGGAGGAGGCATGAACTCTGTGGCCCTGAAACAGGAAATATTTATAGGTTCGATTCATCTGATTTCAAAAAGGTATTACTTCTGAATAAAGTCATTTTATTGAGGAACTGCTGGTCTGGCCCACCAGTTATATGCTCTCCAGTCCAGTTATTGCCATCTAATTCCTTAATCCGGTCATTTTTTTATATTCAAACACTACATGATGCTGTAAGAAACTCCCTTGATAATACCAACACTGAGAACATCTCACATTTGAATGGTGGAGTTCTAAATTTGGATGGTCATGTTGGGAGAATTTTAACGGTTTCTATTCATCCTTGTATATGTGAAGTTCCAATTGCTGCTTCTCTGGATTCTAATGGACTGCTACTTTTTTGGTCACTTTCTAGGATTCCAAACTACACCGTGGGATGTCCAACCTTAATTCCCACTTGGCAACTCTATGGAAAGCTTCTAACACATGACTATTGTTCCATGTATACAAGCTTGAGGTGGGCACGTTCAGTATTTGATGATGAACAGGTTCTTTTCATGGGACATGCCAGAGGCATTGATTGCTTTATTGTCAAATTTTGTCAAACTGAAGAAGAAAATGTACAAAACCACTACTTTTGCACTATACCTTTCAGTGGTCATGTTCCTTATGAGGATGGCCCTACTGATATCTTTGCAATTTCTTTGGACTCCACTTGTAATAAAACATTTTCTGACAATAAACTTATGCTTTTGGCAATTTGGATGCGGGGATTTCAGGCCCTGTCATGGGAAATTACCTTTCACTCATTTGACATGTCAACAAGCTATTGTGAATGCAATTTTGACGCTAAGAGTGTTGCTGACAATAGTATGTGGGCATTTGAAATTGCTTTTGCTGGTAAAAGATACTGCATTAGTGTCAATCCTTGCTCATCTGAGTTTTCTAGTACTCTTACTAATGATCTGGTCATTAGTTTTTCTGTGGCTTGCCCAGCTACTCTTAGCCAAAGACAACAAGAATTTGGTTTAGCAAATGATCATTGTAGTTGTTATCCTGCATATATCCTCATCACAGGCTGCTCTGATGGCAGCTTGAAACTGTGGAGAAGTAAGCATGGTAACAAATCAACCTTGCACATGCCATGGGAGCTTGTAGATTGCAAGGCCTCAACTATCCTGACTCTGGATTCTGACGGTAATAACTTTCTGGAGCAGATGAGATTGGTTTCGTTGAGCTTATGTGAGTTACTGAAGACAACTGTTACACACACTTCCTCTTATCACACTAAACAACTTGCAGCATTTCTCTGGCAGAAATTTGAAAATGATCTTAGCACAACGATTCTTGAGTGGTTAAAAAGACCTAGTTTGTCAGAATCCAATCAAGATCAAAGTCAACGGATTATCAATTTGGAATTGATGAACACGAAATATAAATACTTGGTTTATCAACTATTATGGGATCACTGTGCTGATCCAAAATTGATATCTGACAGCTTTGCACAGCTACATAAAACTGATGATACACATGATTATGGAAGTAAAGTTGGCAATAGTTCTTCTAGTCATGAAGTTGTATCTTCCGTTAAAAGAGTGTTTCAAGGTGCCCATGCTTCTGCATTGTGTATAAACTCAACTAATCAACGGGAAGCTGCACTTGCTACCAATCGGAAGGCTGATTGGCCACAAGATGGGTGGGCAGTTTCTGAATCCACCCCAGAACCAGCATGTGTTTCCCCTGGTGTTGGTCTTGGGGACAAGAAAGGGGCTCACCTTGGCTGGATGGAGCCACAGTTGTTCAACAAGGATAAAGCTGAAGCTACGAATGGAGTTCTGCCTGCTGCTGATGTGCCTCCTCCTTATGCTTTAGCTTCTGTATCGGCTTTAAAGTTTGATCACTATGGACACCGGTTTGCAAGTGCAGCATTAGATGGAACTGTCTGCACATGGCAGCTGGAGGTAGGAGGAAGGAGCAATGTTCGTCCAACAGAATCATCCCTCTGCTTCAATGGTCATGCATCGGATGTAACTTACTTTCCTTCAAGTGGATCAATAATAGCTGTGTCTGGATATAGCTCAAATAATTTCAATGTGGTTATATGGGATACTCTGGCTCCCGCAACAACCTCTCGAGCTTCCATTTTATGTCATGAAGGTGGTGCTCGCTCCCTTTGTGTGTTAGATAATGACGTAGGAAGTGGTTCTATTTCCCCTCTTATTGTGACTGGTGGTAAAAATGGTGACGTTGAAATTCACAACTTTCGTTATATGGCTACTGGAAAAGCTAAAAGGCACAGGTATGCTGATAATGGCGAACAAAGCACCCCTAAGTCTTCGAATTCTGACAAGGACAAGAATGTAAATGGGATGCTTTGGTATATTCCGAAGGCTCACTCAGGGAGCATCACAAAAATAGCTGCCATCCCAGATACCAGCTTGTTTTTGACTGGAAGTAAGGATGGAGATGTCAAACTCTGGGATGTCAAGAGCACTCAGTTAGTTTGCCAATGGTCAAAATTGCATGAAAAGCACACCTTCATGCAGCAGAGCTCTCGTGGATTTGTCAGCGTTGTTCGGTCTCTGCTCTCTACTGTTGACGGAGGATTTAAACGGCGTCGTACCACTTCTAAACTGAAAACTGTAATTGTCACTGGACTGGGGGAAAAGGCTGCCACTGGAAACCGACAGCATCGGATGACGGATGATAACGATAAAACAAAGGCACGGAGGCCATGGTCTTTGACAACCTTCATCTTTCTATTTTCCTCTTATTCTTTTAGATCCCAATTCCAAATTCTTCATCTGCTTCAATAG 3489 0.4285 MEAKPHQPCAACRMLRRRCDRNCLLAPYFPADELDKFAVVHRVFGASNVIKMIQMVEETKREDAVKAIVYEAMARVRDPVYGSAGAIQRLQKMVQQLKVEVEAMKARVSEVQQQRDQLLMNINPGFPQFPFNDNLQDPFFEDYYAAFSSDPIMDQFPLQGDWLYYIFVTWGTESGGIFRISEGTSQVFSKEWFDHEVGKCDWLVGIGPGMLLSLWAIHCRDDLSSLRSPRVKLWRRHELCGPETGNIYRFDSSDFKKVLLLNKVILLRNCWSGPPVICSPVQLLPSNSLIRSFFYIQTLHDAVRNSLDNTNTENISHLNGGVLNLDGHVGRILTVSIHPCICEVPIAASLDSNGLLLFWSLSRIPNYTVGCPTLIPTWQLYGKLLTHDYCSMYTSLRWARSVFDDEQVLFMGHARGIDCFIVKFCQTEEENVQNHYFCTIPFSGHVPYEDGPTDIFAISLDSTCNKTFSDNKLMLLAIWMRGFQALSWEITFHSFDMSTSYCECNFDAKSVADNSMWAFEIAFAGKRYCISVNPCSSEFSSTLTNDLVISFSVACPATLSQRQQEFGLANDHCSCYPAYILITGCSDGSLKLWRSKHGNKSTLHMPWELVDCKASTILTLDSDGNNFLEQMRLVSLSLCELLKTTVTHTSSYHTKQLAAFLWQKFENDLSTTILEWLKRPSLSESNQDQSQRIINLELMNTKYKYLVYQLLWDHCADPKLISDSFAQLHKTDDTHDYGSKVGNSSSSHEVVSSVKRVFQGAHASALCINSTNQREAALATNRKADWPQDGWAVSESTPEPACVSPGVGLGDKKGAHLGWMEPQLFNKDKAEATNGVLPAADVPPPYALASVSALKFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPTESSLCFNGHASDVTYFPSSGSIIAVSGYSSNNFNVVIWDTLAPATTSRASILCHEGGARSLCVLDNDVGSGSISPLIVTGGKNGDVEIHNFRYMATGKAKRHRYADNGEQSTPKSSNSDKDKNVNGMLWYIPKAHSGSITKIAAIPDTSLFLTGSKDGDVKLWDVKSTQLVCQWSKLHEKHTFMQQSSRGFVSVVRSLLSTVDGGFKRRRTTSKLKTVIVTGLGEKAATGNRQHRMTDDNDKTKARRPWSLTTFIFLFSSYSFRSQFQILHLLQ 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0108 1162 PANTHER RABCONNECTIN-RELATED 744 1083 - -
Lele37g0108 1162 Coils Coil 87 121 - -
Lele37g0108 1162 ProSiteProfiles Trp-Asp (WD) repeats profile. 1020 1061 IPR001680 GO:0005515
Lele37g0108 1162 SUPERFAMILY WD40 repeat-like 850 1067 IPR036322 GO:0005515
Lele37g0108 1162 Pfam WD domain, G-beta repeat 1020 1052 IPR001680 GO:0005515
Lele37g0108 1162 Gene3D - 848 1123 IPR015943 GO:0005515
Lele37g0108 1162 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Lele37g0108 1162 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Lele37g0108 1162 MobiDBLite consensus disorder prediction 987 1009 - -
Lele37g0108 1162 SMART WD40_4 1013 1052 IPR001680 GO:0005515
Lele37g0108 1162 SMART WD40_4 841 876 IPR001680 GO:0005515
Lele37g0108 1162 SMART WD40_4 559 594 IPR001680 GO:0005515
Lele37g0108 1162 SMART WD40_4 887 927 IPR001680 GO:0005515
Lele37g0108 1162 SMART WD40_4 318 360 IPR001680 GO:0005515
Lele37g0108 1162 SMART WD40_4 932 978 IPR001680 GO:0005515
Lele37g0108 1162 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1020 1055 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0108 Lele-ChrLele37 862039 875256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0108 8 119 AS2 family AT1G07900 53.571 4.64e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele37g0108 LOB 7.6e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0108 37 862039 875256 Lele37g0108 37 862039 875256 ECH
Lele37g0108 37 862039 875256 Lele39g1319 39 21618087 21630541 hybridization
Lele37g0108 37 862039 875256 Lele40g0113 40 805356 818825 hybridization