Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0102 ATGGAATCCGAAACACGACGGAAAATCGCGGAAATGGTGCTGGATGTACTGAAGAATTCCAACATTGATGAAGCGACCGAGTTCACAGTCCGACTCGCGGCGTCGGAGCGGCTCGGGATGGATCTTTCTGACCCGGAACACAAGCTGCTTGTGAGAGGCATTGTGGAGTCGTATCTGCTCGCTATCGCGGAGGAAGCAGGTGGATGGGTCCCAGCGGCTGAGCCAAGTGCTCCACAAGAGACTAGAGAGGTGATGCAGTATGAGCTGGGGGTGAAGCCAAAGGAGGTTAAGGAGGACTCGGAACGCATAATTTGCCAGCTATCAAACAAGAGGAATGTGTTGGTTCATGAGTTCAGAGGGAAAAAGTTAGTCTCAATCAGGGAATTTTATCAAAAAGATGGAAAACAGCTCCCTTCAGCTAAAGAGGGAGATGCTAACTTCCTGACAAAGGTGAGGAGTTTGCCGACTGAACAATGGTCTGTCTTAAAGAAAAATGTCCCTGCCATAGAGGAAGCTATTGCAGCGTTGGAAGCAACGATGAGGTCCGAGGTCCATGGTAAACAAAATGGAGATGTGCTGAACCCAATTCATGGTAAGCGAAATGAAGATGTGCCAGACCCAGTTCCTGGTAAGCAAAATGTAGATGTGCCGAATCCAATTCATGGTAAGCAAAATGTAGATGTGCCGAATCCAATTCATGGTAAGCAAAATGGAGATGTGCTGAATCCAATTCTTGATGCTGCCCCTCCTGAACCTGTCCCTATTGAAATCAGCCGTTTTGATGGGAAAAATTACCAATTTTGGGTTCAGCAGATGGAATCACTCTTAAAGCAACTAAAGATTGCATATGTTCTCACTGAACTATTCCCAAATGCTACACCAGGACCACATTCAAGCTCTGAAGAAGTTGCTGAAGCCAGGGCAGCGGAAAAGAGGTGGGTGAATGATGATTTCACTTGTCGTCGCAACATCTTGTGCTATTTATCTGATAATCTGTTTAATCAGTATGCAAATAGAAAAATGACTGCTAAAGAACTATGGGAAGAGTTAAAACAAGTTTATTTGTATGAGGAATTTGGAACAAAGAGATCACAAGTAAAAAGGTACATTGAATTTGAGTTCGTTGAGGAGAAATCCATACTTGATCAAATCCAAGAATTAAATACCATTGCAGACTCTATTGTCTCTGCTGGAACGATGATCGAGGAAAACTTCCACGTCAGTGTCCTCATCTCCAAGCTTCCCCCATCTTGGAAGGATGTTTGCATCAAGTTAATGTGCGAAGAGTATCTACCGTTATGGATGTTACTGGAACGTTTGAGGACGGAAGAAGAATCTCGCAATCAAGTCAAACAAGGGGCTGAACCTTCCAGTAGTAACACAAGCCATCATGAGGTAAGTAAATTTGTTCAAAGAGGGAAAGATATGAAGCTTTCAAGCATGTTTGGGCAGAGGAATCATAGGCCAGACATGAATGTCAGGAGTATAGTCTGTTATGTCTGTGGGAAGAAAGGGCATCTTGCCAAACACTGTCGGAGAAGATATGACAATCAAAGTAAAGAAAGAAGAATAGAAGAAAATGGGCCCTCTGCACCAGTAATTTCACAGGCTAACATGGTTGGTGTCACTGAGTAG 1635 0.4398 MESETRRKIAEMVLDVLKNSNIDEATEFTVRLAASERLGMDLSDPEHKLLVRGIVESYLLAIAEEAGGWVPAAEPSAPQETREVMQYELGVKPKEVKEDSERIICQLSNKRNVLVHEFRGKKLVSIREFYQKDGKQLPSAKEGDANFLTKVRSLPTEQWSVLKKNVPAIEEAIAALEATMRSEVHGKQNGDVLNPIHGKRNEDVPDPVPGKQNVDVPNPIHGKQNVDVPNPIHGKQNGDVLNPILDAAPPEPVPIEISRFDGKNYQFWVQQMESLLKQLKIAYVLTELFPNATPGPHSSSEEVAEARAAEKRWVNDDFTCRRNILCYLSDNLFNQYANRKMTAKELWEELKQVYLYEEFGTKRSQVKRYIEFEFVEEKSILDQIQELNTIADSIVSAGTMIEENFHVSVLISKLPPSWKDVCIKLMCEEYLPLWMLLERLRTEEESRNQVKQGAEPSSSNTSHHEVSKFVQRGKDMKLSSMFGQRNHRPDMNVRSIVCYVCGKKGHLAKHCRRRYDNQSKERRIEENGPSAPVISQANMVGVTE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0102 544 Pfam gag-polypeptide of LTR copia-type 313 449 - -
Lele37g0102 544 Gene3D - 493 536 - -
Lele37g0102 544 PANTHER PBF68 PROTEIN 257 520 - -
Lele37g0102 544 Pfam Transcriptional Coactivator p15 (PC4) 105 141 IPR003173 GO:0003677|GO:0006355
Lele37g0102 544 SUPERFAMILY ssDNA-binding transcriptional regulator domain 104 174 IPR009044 GO:0003677|GO:0006355
Lele37g0102 544 MobiDBLite consensus disorder prediction 447 468 - -
Lele37g0102 544 SUPERFAMILY Retrovirus zinc finger-like domains 484 519 IPR036875 GO:0003676|GO:0008270
Lele37g0102 544 MobiDBLite consensus disorder prediction 451 466 - -
Lele37g0102 544 Gene3D Transcriptional Coactivator Pc4; Chain A 95 180 IPR009044 GO:0003677|GO:0006355
Lele37g0102 544 Pfam DEK C terminal domain 5 59 IPR014876 -
Lele37g0102 544 ProSiteProfiles Zinc finger CCHC-type profile. 498 513 IPR001878 GO:0003676|GO:0008270
Lele37g0102 544 SMART c2hcfinal6 497 513 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0102 Lele-ChrLele37 802656 805692 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Lele37g0102 Retrotran_gag_2 2.6e-17 CL0523