Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0044 ATGCTCTTCCTTCTGCTTCAACGATTTCTGTTGGTGCAAGCGATTGATTGTTGGAAGAATACAGTAGACAAAGAAATTGATTGTGTAGAAAAGGTTGAAGAAGCCTCCGATGAGTTCAGTCTCTATCTGTATAACGTGGTTATTCCAGTAGGTGGTACATTGACAGCCGCTCTAATAACATGGATTGTGATGCCTCGTATTCTGAGGAAACGTCATAAATATTCAATGCAAAGTCCTGCCGCAACACTTCTGGAGGGAAGCATATCTGGGGAACAAGTTCCTTATGAGAAAAGCTTCTGGGGTGCTTTGGAGGATCCAGTTCGATACTTGGTCACCTTCATGGCATTCTCACAGATGCAACATAACTTTGATTTGCTGTTGTGTGATGGTGGCTCCAACAACTTTAGCCTCACACCTTGCACTGGCTTGGAAGGGTGCGGTGATCCTTTCATTTGTGTGGTTTCTGCATCAATGGAAAACAAATACGCTGGCACGGTAGAGGGTGATGAAGTGGTTGAAATGGAACTCACAACTACATCATTGCTGAATGCTGACAAGTTCCCTGTTGTAGAGCCAAACTCACTTTTTTCCAGCCAGAGCAAAGATGAGATGCATAGGGCAGAACAAGATATACTGATGGAAGTAGTTGAGATTATTAAGAAGCATGGTGGTCAACTTGGGCTAGTCACGCGTCATATGATTCAGATTTACAAAATGAGGTTTCGGTTTTATTTCCGAATGATTTCTGATCATTATGGTTGCTCTTATCGAATTCTTTTATTGGAATGGGCAACTCATTCACTGGAAATAATTGGATTGGTGTTTCGGAATTTCTCTTCGTACTTGCCTTGTTGGTTTTCTGATCATTACGGTTGGATGGCCGGAGCAAGGTTTTCCTATCTGAAACGTCTCCAGAACTATTCAGCTAAGGGTTCTTTTAACGTGGAATTAGTTCAGCCAAATCAACGTATCATGAACCTTACAAGATTTAGGGATTGTGTTCATTTAAGATTTCTGAGTACCTCATTCAGTCAAGCCTATTCCAAAAGAGAGTGGCAGTTACCTGAAATTTTTGCCAAGAACCAGTTTAGAGCCATGACTTCTGGAAACCGCAACCTCTTCACGACCAAACCTGGGGCTTCTTTTTCTCCTAAATTTTCTAGTTTTTTCTTCCATAACGCTCTTCCTTCTGCTTCGCCTTCAATGGCCCTCTTGTTGAATCATAGATCATATATGTCATCTCTGAGTGGAAAAGGAAGTAGAGATGGGAGCACTGGTTTTCCTTCTAATTCTGCGGCAAGTGACGTGAATGCCAGCAGTGATTCTATTGGTACCAGTGATTGGGCTGATAAAATCAAAGATGCTTGGCAGAGTGCAGTAGAGACAGCAACATATTCTGCACAAAAGGTTAAAGAAGCCTCTGATGAGTTGACTCCATATGCCCAACAGTTGCTCCACTCACATCCATACCTTAATGGTGTGGTTATTCCAGTTGGTGGTACATTGACTGCCACACTTATAGCATGGATTGTGATGCCTCGGATTTTAAGGAAATTTCACAAATATACTATGCAAGGTCCTGCTGCAATATTTCCAGGAAGCACATCTGTGGAGAAAGTTCCTTATGAGAAAAGTTTTTGGGGTGCTTTGGAGGATCCAGTGCGATATTTGGTGACCTTCATGGCATTCTCACAGATTGGTGTTCTGGTAGCTCCAACAACTGTGGCCTCACAATACCTTTTACAGGCTTGGAGGGGTGCAGTGATCCTTTCATTTGTGTGGTTTTTGTATCGATGTAAAACAAATGTCTTGGCACGTATTTTGTCAAGTCAAAATTTACTCGGGCTTGATCGAGATAAATTGCTTGCTCTAGACAAAATATCATCCGTTGGTCTATTTGTGATAGGTATAATGGCTTTAGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTATAACTGTTGGTGGTATAGGAGGAGTTGCCACTGCTTTTGCTGCTAGAGACATACTTGGCAATGTATTTAGTGGGTTGTCCATGCAGTTTTCAAAGCCCTTTACAGTTGGAGATACAATAAAAGCTGGCTCGGTAGAGGGTCAGGTGGTGGAAATGGGGCTTACTACCACATCATTGCTGAATACTGAGAAGTTCCCAGTTATAGTGCCAAACTCACTTTTTTCTAGCCAGGTAATAGTGAATAAGTCTCGTGCACAATGCCGTGCCATCATATCTAAAATTCCTTTGCGAATTGAGGATATAAATAAGATTCCCAAGATATCAGATGACATCAAGGGCATGCTAAGAGCAAATGCTAAGGTTTTCTTAGAGAAAGAGGTTCCTTACTGTTACTTGTCGCACATTGAAAGTTCATATGCAGAATTGACTATTGGATACAACCTCAAACACATGCGTAAAGATGAGTGGTACTCTGCAGAACAAGATATTCTGCTGCAGGCAGCCCAGATTATAAAGATGCATGGTGCTGAACTCGGCAATACCTGGCAAAACATGCCTTGA 2514 0.4208 MLFLLLQRFLLVQAIDCWKNTVDKEIDCVEKVEEASDEFSLYLYNVVIPVGGTLTAALITWIVMPRILRKRHKYSMQSPAATLLEGSISGEQVPYEKSFWGALEDPVRYLVTFMAFSQMQHNFDLLLCDGGSNNFSLTPCTGLEGCGDPFICVVSASMENKYAGTVEGDEVVEMELTTTSLLNADKFPVVEPNSLFSSQSKDEMHRAEQDILMEVVEIIKKHGGQLGLVTRHMIQIYKMRFRFYFRMISDHYGCSYRILLLEWATHSLEIIGLVFRNFSSYLPCWFSDHYGWMAGARFSYLKRLQNYSAKGSFNVELVQPNQRIMNLTRFRDCVHLRFLSTSFSQAYSKREWQLPEIFAKNQFRAMTSGNRNLFTTKPGASFSPKFSSFFFHNALPSASPSMALLLNHRSYMSSLSGKGSRDGSTGFPSNSAASDVNASSDSIGTSDWADKIKDAWQSAVETATYSAQKVKEASDELTPYAQQLLHSHPYLNGVVIPVGGTLTATLIAWIVMPRILRKFHKYTMQGPAAIFPGSTSVEKVPYEKSFWGALEDPVRYLVTFMAFSQIGVLVAPTTVASQYLLQAWRGAVILSFVWFLYRCKTNVLARILSSQNLLGLDRDKLLALDKISSVGLFVIGIMALAEACGVAVQSIITVGGIGGVATAFAARDILGNVFSGLSMQFSKPFTVGDTIKAGSVEGQVVEMGLTTTSLLNTEKFPVIVPNSLFSSQVIVNKSRAQCRAIISKIPLRIEDINKIPKISDDIKGMLRANAKVFLEKEVPYCYLSHIESSYAELTIGYNLKHMRKDEWYSAEQDILLQAAQIIKMHGAELGNTWQNMP 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0044 837 Pfam Mechanosensitive ion channel 626 828 IPR006685 GO:0016020|GO:0055085
Lele37g0044 837 Gene3D - 579 683 - -
Lele37g0044 837 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 580 667 IPR011014 GO:0016020
Lele37g0044 837 SUPERFAMILY Sm-like ribonucleoproteins 668 733 IPR010920 -
Lele37g0044 837 Gene3D - 684 732 IPR023408 -
Lele37g0044 837 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 17 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0044 Lele-ChrLele37 389475 396448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0044 396 835 Mechanosensitive Ion Channel Family AT4G00290 61.538 0.0 563