Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0039 ATGCAGTCATTGCAACAGCAATTACTTCGAAAACCTGAAGGGAATGAAACTTTTTTAGCATATCAAGCAGCCCTTCAGGGGGCATATGGGGGTAACAATTTTTCATCTCCCAGTGCCATGCAGTTGCCTCAACAATCTCGGAAATTCAATGAATTAACCCAACATGGTCCCAAACAAGAGGTCGAACTCAAGGCTCAAAACATTGAGCAGCAAATGCTAAATCCTGTTCATCAAGCATACCTTCAATATTCACTTCAGGCTGCCCAGCAAAAGTCTGCTTTGGCAATCCAGTCTCAGCAACAAAATAAAATAGGGATGTTAGGGTCTTCATCTGTGAAGGATCAAGAAATACGTTTGGGAAATATGAAAATGCAGGACCTTATGTCCATGCAGTCGCTAAATCAAGCTCAAGGATCTACCTCCAGGAATGTAACTGAACAATTTTCTCGTGGGGAAAAGAAGATAGAGCAGGGACAGCAGTTAGCCCCTGATCTAAAAAGTGAGGGAAAGCCTTCAACCAAGGGACCAGCCGCGGCACAGTTAATGCCTGGAAATATGATAAGACCTGTACATGCACCCAATGCTCGGCAGGGCATCCAAAATGTCATGAGCAACCAGATTGCAGTGTCTGCTCATTTACAGGCCATGCATGCATGGGCACGTGAGCGTAATATTGATCTATCGCATCCTGCAAATGCTAACTTAATGGCGCAACTCTTTCCTATGATGCAGTCAAGGATGGTTTCTCAACAAAAAGCAAATGACAGCGGCATTGGTGCTCAGTCATCACAATTACCTGTTTCAAAGCAGCAGGTTACATCTCCATCAGGTGTAAGTGATAGCTCAGCACATGCTAATTCATCAAGCGATGCATCTGGGCTGTCTGGTCCTGCAAAAGCCAGGCAGATTCCTGCGAGCCATTTTGGTCCACCGGCAAATGCTGTTACTGCTAGCCACTCCAGTGACATGGTAGTGCAGCAATTTAATAATCATGGCAGAGAGTCTCAAGTATCCGTGAGGCAACCTGTTTTAGTTGGAAATGGAATGCCTTCTGCACAACCCCAACAGTCCTCTACCAACGTGAATTTGGGTTCAGATCATCATTTGAATGCAAAAAGTACTTTATCTGGTCCAGAACCTCCGCAAATGCAGTATTTAAGGAAGTTAAACCAATTGTCTCCTCAGGCATCAGGCACTACAAATGATGGGGACTCAGGAAATCATGTGAAATCTCAAGTGGCACCATCTCAGATGCCTCAACAACAAAATGGATTTACCAAACAACAGCTGCATGTTCTTAAAGCACAGATACTGGCATTTAGGCGGCTCAAGAAAGGAGATGGTACCCTTCCCCAAGAACTTCTTCGGTCTATTGTCCCACCACCTCTTGAGTTGCAATTGCAGCAGCCAATCCTTCCTTCAGGAGGACAAAATCAAGATCAGTCTGCTGGAAACATCATGCCAGAATACTCAAGGCACATAGAATCTGAAGCAAAGGACTTGCAACATGTCCCTTCAGTTAATGGGCAGGGTTCTTCAAAGCTGGAAACTTTTGTGAGAGATGAGAAATCCACTGTCTCAGCAGTTCATATGCAAGCTAAACCTGTTGCAACAAAGGATCCTACTCCAATGCTATCTTCTCAAAAGGAAGAGCAACAACCATTTGGTTCCTCTTGTAAGTCAGATCAGGAAAGTGAGTGTGAAACTAGCAGAAATCCTGTTAGGAATGAGTTGCCGTTAGACAGGGGAAAGGCTATAGCACCACAGCCTTCTGCATCTGAGTCAATGCAAAATAAGAATCCTACACAAACAAGCGCAGTTGGGCAACCAAAAGATGTAGGATCTACAAGAAAATATCATGGACCCCTATTTGATTTCCCCTTCTTTACCAGGAAACATGACTCCTTTGGGTCATCAATGATGGTAAGCAACAACAATAATTTGTTACTGGCATATGATGTCAAAGATCTTTTTGCTGAGGAAGGCATGGAAGTACTTAACAAGAAAATGACTGAGAATTTAAAGAAGATTGAAGGTCTACTAGCAAATAATTTAGAGAGGAAACTAATTAGGCCAGATCTCGTGTTGAGGTTACAAATTGAAGAGAAAAAGCTTCGTCTTAGAGGTCTTCAGGCACATTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGACAGGCAATATCGTAAGTTTGTTAGATTGTGTGAGCGTCAGCGGATAGAACTGGCTAGGCAAGTGCAGGCATCACAGAGAGCTATAAGGGAGAAACAACTCAAATCTATATTTCAGTGGCGTAAAAAGCTTCTTGAGGCACACTGGGCCATACGTGATGCTCGGACTGCTCGGAACAGGGGGGTGGCGAAATATCATGAGAGAATGTTGAGGGAGTTTTCAAAACGTAAAGATGATGACAGGAACAAAAGGATGGAAGCCTTGAAAAATAATGATGTCGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATGCCAGGTGATGCTGCGGAGAGATACTCTGTTGTTTCGACTTTCTTAACACTGACAGAAGAGTATCTTCATAAGCTGGGAAGTAAGATAACAGCTTCCAAGAATCAACAGGAAGTAGAGGAGTCAGGGAAAGCTGCTGCAGCTGCTGCACGGTTGCAGGGTCTTTCTGAAGAAGAAGTAAGAGCAGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGATGATTCATCTGTCAGCAAATATTACAGCCTTGCTCATGCTGTGAATGAGAAGGTCATAAGGCAACCATCAATGTTGCGGGCTGGAACATTGAGAGATTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTTCAGGTTATGGCATTGATTGCCTATTTGATGGAATTCAAAGGAAATTATGGCCCACATCTCATTATAGTCCCGAATGCTGTTTTGGTTAACTGGAAGAAGGTTTGTGCGTTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGATCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGGATGAAAGATAGGGATTCAGTTCTAGCACGTGATCTTGATCGATATCGTTGTCAAAGACGCCTGCTTTTGACTGGAACCCCCTTACAGAATGATTTGAAGGAGCTTTGGTCACTTTTAAACCTACTCCTTCCTGAAGTTTTTGACAATCGGAAAGCATTTCATGATTGGTTCTCGAAACCTTTTCAAAAGGAAGGCCTTAGTCAAAATGCAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATAATTATCCATCGACTTCATCAGATTCTTGAGCCATTCATGCTCAGGCGTCGTGTTGAAGATGTAGAAGGCATGCTGCCACCAAAGGTCTCTATAGTTTTGCGATGTAGAATGTCAGCTATCCAGAGTGCTATTTATGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAGCATAAGGTTCAAAAGAATCCAGTCTACCAGGCAAAGCAATATAAAACGTTAAATAATAGATGCATGGAGCTGCGTAAAACTTGCAATCATCCATTGCTTAACTACCCATTCTTCGATGACTTATCCAAAGATTTCCTTGTAAAATCTTGTGGGAAACTGTGGATTTTGGATCGAATCCTTATAAAACTTCAAAGGACTGGACACCGAGTTCTGCTCTTTAGTACGATGACAAAACTCTTGGACATTTTGGAAGAATACCTACAATGGCGACGGCTTTTGTACAGAAGAATTGATGGTACAACAAGTTTAGAAGATCGTGAAGCAGCTATAGTGGATTTCAATAGTGCTGGTTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTAGTCATATATGATCCTGACCCAAATCCTAAAAATGAGGAGCAGGCAGTTGCTAGAGCTCATCGCATTGGGCAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTGGACAAGATCTCCAGCTATCAAAAAGAGGATGAAATGAGAAGTGGAGGCACTGTTGATATGGTGGAAGAACTTGTAGGTAAGGATCGTTATATTGGATCCATTGAAGGCCTAATAAGGAACAATATTCAACAGTATAAGATTGATATGGCTGACGAGGTCATTAATGCTGGACGATTTGACCAAAGAACAACACATGAAGAGAGACGCTTGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAGGAGACTGTCCATGATGTTCCCTCACTACAGCAGGTAAATCGCATGATTGCTAGGAGTAAGGAGGAACTTGAATTGTTTGATCAAATGGATGAGGAATTGGATTGGATTGAAGAAATGACAGGGTATGATCAGGTGCCTAAGTGGCTTCGAGTAAATACAAGGGAAGTAAATGCCATTATTGCTGCTTTATCAAGAAGACCATCAAAGAACACTCTGTTGGGTGGTGATGTTGGCGTAGAATCCAGTGAAATGGGATCTGAAAGGAGAAGGGGACGACCCAAGGGAAAGAAGAATCTTAATTATAAGGAGTTAGACGATGAAAATGAAGAATTCTCTGAAGCAAGTTCTGATGAAAGAAATGAATCTTCAGCCCATGAGGATGAAGGGGAAATTGGAGAATTTGAAGATGATGGGCTGAGCGTGGCAGATGGAGCTCAACCCAATGATAACGATCAATTGGAAGATGGTCCAATTTGTGATGCTGGATATGAATTTCCTCAGTCTATAGAAAATGCTAGAAACAATCTTACAGCTGAAGGATCTGGATCCCCAGGAACATCCTCAGACAGTCAAAGGTTGAAACGGACAGTATCTCCTTCAGTTTCCTCCCAGAAATTTGGTTCCCTCTCTGCATTGGACGCCAGGCCAAGTTCCCTTTCAAAAAGGATTGTATGTACTGATGAGTTAGAGGAGGGAGAAATTGCTGGATCTGGTGATTCTCACATGGATAATCAACAATCTGGGAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGCAACCTAAGATAAAGCGTAAACGTAGTCTTCGTGTTAGACCTCGTCATGCCATGGAGAGACCTGAGGAAAAGTCTGGTGGCGAGGTGGGATCTCTTCACCAAGGAGAATCATCTCTTCTGTCTGTTCATGCAGACCATAGATTTCAAGCGCAAGCAAGGACTGATCCTGAAGAAAAGTCATTTGTAGGATCCAATGCCAACAGGCATGATCAGAATGAGTCATCCTTGAGAGTAAAGAGAAATTTACCTTCAAGGAGAGTAGCTACTACCTCCAAATTTCAAGGCTCACCTAAGCTTAGTCGTTTGAATTGCATTTCTACTCCTTCTGAGGATGGTGGACACTCAAGAGAAAGTTGGAAGGGGAAGCCTATCAACTCTAGTGGGTCTTTGACCTTATCCTCTAAAATGCCTGAAATCATCCAAAGAAGGGGTGGTGTGGTGGAAGGGCTTCAGAATAGTATTAGTAATGTGGTGGGCTCATCATGTTCCATGGATCTCACATTGCCCTGTCTTCCTTGCAAGAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGTCAGCAAATTGTACCTTTGCTAAAAGATTTATGGAAGAGGATGGAAAATTCAGGGTACACAGGTGGATCTGGGAATAGTTTGTTGGATTTGCGGAAGATTGACCAGCGAATTGATAGATTGGAGTATAGTGGAGTAATGGAGCTTGTGTTTGATGTGCAGTTCATGCTGAAGAGTGCAATGCATTTTTATGGGTTTTCACATGAGGTAAGATCTGAAGCAAGAAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCTTTTCCTGATACGGATTTCCTAGAAGCCAGAAATGCGCTTCCTTTCTCGGGTCAAATTTCAGCCAGTGCTGTAACATCTCCCAGACAAATGGCTGGCAGCCCAACCAAGAGGCACAGGACGATAAGTGAGGTGGAAACTGATGCAACCCCTTCACAGAAGCACTTACAACGTGGATCTGCTTCAAGTGGGGAAAACACCAGGATCAAAGTTCATATTCCACAGAAGGAATCAAAATCTGGAAATGGGGGTGGCAACAGCCGAGAACATCAGCAGGATGATTCTCCACTGCTTACTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGATAAATCATTGGCGAAGTCTAGGACTGGGTCAGTTGGCCCGGTCTCACCGCCCAGTGTGGTCCCTGCTGCAAGAAGTCCAGGGCTTGGTTCAATCCCAAAGGATGCAAGACTGGCGATTGGCCAGCCATCTCAGCAACAGAATGGGTCTGGTGGGTCAGTTGGCTGGGCGAATCCGGTAAAGCGGTTAAGGTCAGATTCTGGGAAGAGAAGACCAAGTCATCTGTAG 6561 0.4312 MQSLQQQLLRKPEGNETFLAYQAALQGAYGGNNFSSPSAMQLPQQSRKFNELTQHGPKQEVELKAQNIEQQMLNPVHQAYLQYSLQAAQQKSALAIQSQQQNKIGMLGSSSVKDQEIRLGNMKMQDLMSMQSLNQAQGSTSRNVTEQFSRGEKKIEQGQQLAPDLKSEGKPSTKGPAAAQLMPGNMIRPVHAPNARQGIQNVMSNQIAVSAHLQAMHAWARERNIDLSHPANANLMAQLFPMMQSRMVSQQKANDSGIGAQSSQLPVSKQQVTSPSGVSDSSAHANSSSDASGLSGPAKARQIPASHFGPPANAVTASHSSDMVVQQFNNHGRESQVSVRQPVLVGNGMPSAQPQQSSTNVNLGSDHHLNAKSTLSGPEPPQMQYLRKLNQLSPQASGTTNDGDSGNHVKSQVAPSQMPQQQNGFTKQQLHVLKAQILAFRRLKKGDGTLPQELLRSIVPPPLELQLQQPILPSGGQNQDQSAGNIMPEYSRHIESEAKDLQHVPSVNGQGSSKLETFVRDEKSTVSAVHMQAKPVATKDPTPMLSSQKEEQQPFGSSCKSDQESECETSRNPVRNELPLDRGKAIAPQPSASESMQNKNPTQTSAVGQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMVSNNNNLLLAYDVKDLFAEEGMEVLNKKMTENLKKIEGLLANNLERKLIRPDLVLRLQIEEKKLRLRGLQAHLRDEIDQQQQEIMAMPDRQYRKFVRLCERQRIELARQVQASQRAIREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYSVVSTFLTLTEEYLHKLGSKITASKNQQEVEESGKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDDSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKKVCALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGLSQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGMLPPKVSIVLRCRMSAIQSAIYDWVKSTGTLRLDPEDEKHKVQKNPVYQAKQYKTLNNRCMELRKTCNHPLLNYPFFDDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLLYRRIDGTTSLEDREAAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSYQKEDEMRSGGTVDMVEELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQQVNRMIARSKEELELFDQMDEELDWIEEMTGYDQVPKWLRVNTREVNAIIAALSRRPSKNTLLGGDVGVESSEMGSERRRGRPKGKKNLNYKELDDENEEFSEASSDERNESSAHEDEGEIGEFEDDGLSVADGAQPNDNDQLEDGPICDAGYEFPQSIENARNNLTAEGSGSPGTSSDSQRLKRTVSPSVSSQKFGSLSALDARPSSLSKRIVCTDELEEGEIAGSGDSHMDNQQSGSWIHDRDEGEDEQVLQPKIKRKRSLRVRPRHAMERPEEKSGGEVGSLHQGESSLLSVHADHRFQAQARTDPEEKSFVGSNANRHDQNESSLRVKRNLPSRRVATTSKFQGSPKLSRLNCISTPSEDGGHSRESWKGKPINSSGSLTLSSKMPEIIQRRGGVVEGLQNSISNVVGSSCSMDLTLPCLPCKNVISKLQRRIDKEGQQIVPLLKDLWKRMENSGYTGGSGNSLLDLRKIDQRIDRLEYSGVMELVFDVQFMLKSAMHFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFLEARNALPFSGQISASAVTSPRQMAGSPTKRHRTISEVETDATPSQKHLQRGSASSGENTRIKVHIPQKESKSGNGGGNSREHQQDDSPLLTHPGELVVCKKRRNDRDKSLAKSRTGSVGPVSPPSVVPAARSPGLGSIPKDARLAIGQPSQQQNGSGGSVGWANPVKRLRSDSGKRRPSHL 2186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0039 2186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1152 IPR027417 -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 1830 1854 - -
Lele37g0039 2186 SUPERFAMILY Bromodomain 1940 2004 IPR036427 GO:0005515
Lele37g0039 2186 CDD Bromodomain 1940 1995 - -
Lele37g0039 2186 SMART ultradead3 946 1107 IPR014001 -
Lele37g0039 2186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1156 1493 IPR027417 -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 149 180 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 345 382 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 247 295 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 1708 1727 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 2101 2117 - -
Lele37g0039 2186 SMART helicmild6 1279 1363 IPR001650 -
Lele37g0039 2186 Gene3D - 1158 1386 IPR027417 -
Lele37g0039 2186 Gene3D - 919 1018 IPR038718 -
Lele37g0039 2186 CDD SF2_C_SNF 1248 1373 - -
Lele37g0039 2186 Pfam SNF2-related domain 1020 1229 IPR000330 GO:0005524|GO:0140658
Lele37g0039 2186 ProSiteProfiles QLQ domain profile. 424 460 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele37g0039 2186 Gene3D - 1019 1151 IPR038718 -
Lele37g0039 2186 Gene3D - 752 825 - -
Lele37g0039 2186 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1253 1430 IPR001650 -
Lele37g0039 2186 Coils Coil 1469 1489 - -
Lele37g0039 2186 FunFam ATP-dependent helicase BRM 751 825 - -
Lele37g0039 2186 FunFam Brahma1 1893 2010 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 541 563 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 2151 2165 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 564 578 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 1628 1675 - -
Lele37g0039 2186 SMART QLQ_2 423 460 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele37g0039 2186 MobiDBLite consensus disorder prediction 247 316 - -
Lele37g0039 2186 Pfam QLQ 425 458 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele37g0039 2186 MobiDBLite consensus disorder prediction 2021 2186 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 1530 1757 - -
Lele37g0039 2186 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 962 1099 IPR014001 -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 590 611 - -
Lele37g0039 2186 Pfam Helicase conserved C-terminal domain 1252 1363 IPR001650 -
Lele37g0039 2186 PANTHER SNF2/RAD54 HELICASE FAMILY 694 1717 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 520 612 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 394 424 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 2043 2066 - -
Lele37g0039 2186 FunFam ATP-dependent helicase BRM 1162 1372 - -
Lele37g0039 2186 Pfam SNF2-related domain 953 1016 IPR000330 GO:0005524|GO:0140658
Lele37g0039 2186 MobiDBLite consensus disorder prediction 1775 1805 - -
Lele37g0039 2186 SMART bromo_6 1889 2000 IPR001487 GO:0005515
Lele37g0039 2186 Coils Coil 1561 1581 - -
Lele37g0039 2186 MobiDBLite consensus disorder prediction 1738 1752 - -
Lele37g0039 2186 Gene3D - 1894 2020 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0039 Lele-ChrLele37 343496 354410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0039 971 1403 RAD5 or RAD16-like Gene Family AT1G02670 25.188 7.41e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele37g0039 SNF2_N 4.2e-41 CL0023