Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0017 ATGAACAATAGAGCAAGATACCCACCCGGGATTGGTGTAGGCCGAGGAGGTGTGAACTCGAACGATGCTTTTCAGCCAAGACACCCTCATCAACAACAGTACGTGCCGAGGCATTTGTTACCGCAGCATCAACAGTATCATCATCATCAACATCAGCAACAATATCAGCAGCAGCAGCAGAATCAACACCATCACCACCAACAACAACAGTGGCTTAGACGGACGCACCTGGGTGCTGCTGATTCCAATGTGGTTGACGAGGTCGAGAAGACTATTCAGTCTGAAGCCGTTGACCCAAGTTCACAAGATTGGAAGGCAAGGTTAAAGGTACCACCACCTGATACGCGCTATAGAACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGACTATTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATTCAGGAAGAAAGTATACCAATTGCACTTACTGGCAGTGACATTCTTGCTAGGGCTAAGAATGGAACGGGAAAAACAGCTGCCTTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATAACAATGTTATTCAAGCCGTTATACTGGTCCCAACACGAGAGTTGGCCTTGCAAACATCTCAAGTGTGCAAAGAGTTGGGAAAACATTTGAAAATTCAAGTTATGGTTACTACAGGTGGTACCAGCCTGAAGGATGATATTATGCGGTTATATCAGCCAGTTCATTTACTAGTTGGAACACCAGGACGAATATTAGATCTTGCGAAAAAGGGTGTTTGTGTTTTGAAAGATTGCAATATGCTTGTTATGGATGAGGCTGATAAGCTCCTCTCCCCAGAGTTCCAGCCTTCAATAGAGCAGTTGATTCATTTCCTGCCTACAAATCGTCAAATATTGATGTTTTCAGCCACTTTTCCTGTCACTGTTAAGGACTTTAAAGATAGGTATCTTAAAAAGCCTTACGTTATTAACCTTATGGACGAGTTGACTTTGAAAGGTATAACACAATTTTATGCGTTCGTGGAAGAGAGACAGAAAGTCCACTGTTTGAACACACTTTTCTCTAAGCTGCAAATAAACCAGTCAATTATTTTCTGCAATTCAGTGAATCGAGTTGAGCTCCTTGCCAAGAAAATAACAGAACTTGGGTATTCATGTTTCTATATTCATGCGAAGATGTTGCAAGATCATCGCAATAGAGTATTTCATGATTTCCGCAATGGTGCATGTAGGAATCTCGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCTGTCAATGTTGTCATTAATTTTGATTTTCCGAAGAACTCAGAAACTTACCTGCACAGGGTTGGTCGATCAGGGAGGTTTGGACACCTTGGTTTAGCCGTGAACTTGATTACTTATGAAGACCGCTTTAATTTGGTTGCCTTTGCATTTGTGGTGGATGTGGCTGTTCAATTTGTAGTAAAGCATGAGAGGAGATGCAGTATGAGAATTTGGTTATTGTGGGACTGTGGGGAATGA 1533 0.4168 MNNRARYPPGIGVGRGGVNSNDAFQPRHPHQQQYVPRHLLPQHQQYHHHQHQQQYQQQQQNQHHHHQQQQWLRRTHLGAADSNVVDEVEKTIQSEAVDPSSQDWKARLKVPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQAVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCNMLVMDEADKLLSPEFQPSIEQLIHFLPTNRQILMFSATFPVTVKDFKDRYLKKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLVAFAFVVDVAVQFVVKHERRCSMRIWLLWDCGE 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0017 510 MobiDBLite consensus disorder prediction 1 72 - -
Lele37g0017 510 CDD DEADc_DDX6 130 330 - -
Lele37g0017 510 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 60 477 - -
Lele37g0017 510 MobiDBLite consensus disorder prediction 93 119 - -
Lele37g0017 510 Gene3D - 333 494 IPR027417 -
Lele37g0017 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 499 IPR001650 -
Lele37g0017 510 SMART ultradead3 147 343 IPR014001 -
Lele37g0017 510 Pfam Helicase conserved C-terminal domain 354 460 IPR001650 -
Lele37g0017 510 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 275 283 IPR000629 -
Lele37g0017 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 329 IPR014001 -
Lele37g0017 510 CDD SF2_C_DEAD 340 469 - -
Lele37g0017 510 MobiDBLite consensus disorder prediction 46 72 - -
Lele37g0017 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 478 IPR027417 -
Lele37g0017 510 Gene3D - 114 332 IPR027417 -
Lele37g0017 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Lele37g0017 510 FunFam ATP-dependent RNA helicase DDX6 109 332 - -
Lele37g0017 510 Pfam DEAD/DEAH box helicase 153 317 IPR011545 GO:0003676|GO:0005524
Lele37g0017 510 SMART helicmild6 379 460 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0017 Lele-ChrLele37 165521 170918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0017 128 473 Eukaryotic Initiation Factors Gene Family AT3G19760 39.080 2.12e-91 283