Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1349 ATGATCCTCCCTTTCGATTCTCGGTCATCCATTCTCTCCTGCCCGAACTTTCCCTCACAAACCTCAAATGTTCCAGCTGCCACGTCACCCCCTCGAACCGATCGGGAAAACGAGAGAGATGGTGAAAATGTTGAGCGCGAGATGGCCGCCTATCTCGCTTCGTCGAGTTTTCGTTTCTCTCCGAAGCAGAAGAAGATTTCAAGCTCTGCGAGGATTTGGGCATTCTTGCACGTGAATTTGGAAACTATGACTTCATCTGATCACGACCTCATGGATAATGAAGCTAATGAGCAGCAACAGCAATCAAACTCAGAGATGCAGTCTTCACCTCCAAATGGAATTTCTGATTCAGGTATTGCTGCCCGGAATGTCCAGTATGCAGTGCCTTCTCCACAGATTGGAACTGGACATGCTATGGCACCAGTTTATCCATACCCAGATCCTTACTATAGGAGCATCTTTGCTCCATATGAGACACAACCTTATCCCCCGCAACCCTATGGAACACAACCAATGGTTCATCTTCAGTTAATGGGAATTCAACAAGCTGGCGTTCCTCTACCAACGGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAGTATCATGGTATATTGAGACGTAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTTATCAGGAATCGCAAGCCGTACTTGCATGAATCCCGGCATTTGCATGCGCTGAGAAGAGCACGAGGATGCGGAGGTCGGTTTCTTAATTCAAAGAAAAGCGACGACCAACAGAATGAGGTTTCATCAACAGATAATTCATTGTCCAATACCAATCTCAATCCTGACCAAAATGATATTGCTTCATCAGATAGGATTGCCTAA 867 0.4556 MILPFDSRSSILSCPNFPSQTSNVPAATSPPRTDRENERDGENVEREMAAYLASSSFRFSPKQKKISSSARIWAFLHVNLETMTSSDHDLMDNEANEQQQQSNSEMQSSPPNGISDSGIAARNVQYAVPSPQIGTGHAMAPVYPYPDPYYRSIFAPYETQPYPPQPYGTQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKSDDQQNEVSSTDNSLSNTNLNPDQNDIASSDRIA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1349 288 MobiDBLite consensus disorder prediction 1 45 - -
Lele36g1349 288 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 80 273 IPR001289 GO:0003700|GO:0006355
Lele36g1349 288 MobiDBLite consensus disorder prediction 252 288 - -
Lele36g1349 288 MobiDBLite consensus disorder prediction 9 30 - -
Lele36g1349 288 Gene3D - 192 253 - -
Lele36g1349 288 ProSiteProfiles NF-YA/HAP2 family profile. 192 252 IPR001289 GO:0003700|GO:0006355
Lele36g1349 288 SMART cbf3 191 252 IPR001289 GO:0003700|GO:0006355
Lele36g1349 288 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 194 249 IPR001289 GO:0003700|GO:0006355
Lele36g1349 288 MobiDBLite consensus disorder prediction 94 117 - -
Lele36g1349 288 MobiDBLite consensus disorder prediction 247 288 - -
Lele36g1349 288 ProSitePatterns NF-YA/HAP2 subunit signature. 197 217 IPR018362 GO:0003677|GO:0016602
Lele36g1349 288 MobiDBLite consensus disorder prediction 95 117 - -
Lele36g1349 288 PRINTS CCAAT-binding transcription factor subunit B signature 195 217 IPR001289 GO:0003700|GO:0006355
Lele36g1349 288 PRINTS CCAAT-binding transcription factor subunit B signature 226 249 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1349 Lele-ChrLele36 15569289 15574031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1349 83 284 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.824 2.41e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele36g1349 CBFB_NFYA 1.7e-25 No_clan