Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1344 ATGGATAATTCTGCAGAAGTAGAAGACCAAACATCTGCAGAGAACGGCATCGTCGGCGAGACTGGCTATTTCGCAGGAGGAGAGACCCGTTTGCCCGATGAGGTAATTGGTTGTGCTCTTAGTTTATTGCTTCTATATGGGCGATTTTTCATCGGCAAGGCATGGTGTGGAATTGAAGGCTGTGAAGGACAACACGGAGCTCAGGAAGCAGATGATGTTGCCCTGGAACTGTGGAAGGGTGCCAAAATGTTGGGTGGGCTATATGGAGACCTTCCTCCACCCTCATCGGCCGAAGAAGAGAAACCCAATAACGCCAATGTATGGTCGAGCAGCACCAAGATGGCGCCGGCAACCCTTCGCAAGCCGGTTTTTGCGCCTCCTCAGACGATTCTGAGAACACAGAGCAAGCCCAAAACTGTCAATTCTTCAGCACCAAAAACAGTGACATCGACGCCGGTCGTGGCAACGTCACCGGTGGTGCCCGATGATGCAGCGCAACCTGCTCTTGTTGGTGTCCAATCGACGGTGATAGATGAGTATGACCCGGCGAGGCCCAATGACTATGAGGAGTATCGGAGGGAGAAGAAGAGGAAGTCTAGGGAGGCAGAGATAATGAAAGAGCTCGAGAAGAGACGGCAGGAAGAGGAAGAGAGGGAGAGAAGGGAGAAAGAGGAGCGGGAGAAGGAGAGGGACAGAGAATATGGAGACTCGAGATTGAACATTTCTGGGGAGGAGGCATGGAGAAGGCGTGCGGCGATGAGTGGGGCAGTGCCAAGATCTCCATCGCCCCCTCCTAACGGTGACGGTTTTAGTATTGGCAAGTCAGAAACAGGCGGTTTGGGGCTTGGTGCAGGTGGGCAAATGACAGCAGCTCAAAGGATGATGGCAAAGATGGGATGGAAGGAGGGGCAAGGACTTGGGAAGCAGGAGCAAGGAATCACTACTCCGTTGATGGCGAAGAAAACGGATAGACGAGCTGGAGTCATTGTGAATGCTAGTGACAATAAGCCGGAAAAGAAATTGAAGAGCTTGAATTTCAATGGGCCACCTACGCGGGTGCTCCTGCTTAGGAACATGGTGGGTCCTGGCGAGGTAGATGATGAGCTTGAAGATGAGGTAGGATCAGAATGTGGCAAGTATGGGACTGTTACTCGGGTCCTGATATTTGAGATAACAGAGCCAAATTTCCCCACTGATGAAGCCGTGAGAATCTTTGTGCAATTTGAGAGGTCTGAAGAAACAACTAAAGCCATTATTGACCTTGATGGAAGGTACTTTGGAGGGAGGGTAGTGCGAGCCTCATTTTATGACGAAGAGAGGTTTGGTAAGAATGAATTGGCTCCAATGCCAGGTGAAGTCCCTGGCTTTTTCTGA 1374 0.5095 MDNSAEVEDQTSAENGIVGETGYFAGGETRLPDEVIGCALSLLLLYGRFFIGKAWCGIEGCEGQHGAQEADDVALELWKGAKMLGGLYGDLPPPSSAEEEKPNNANVWSSSTKMAPATLRKPVFAPPQTILRTQSKPKTVNSSAPKTVTSTPVVATSPVVPDDAAQPALVGVQSTVIDEYDPARPNDYEEYRREKKRKSREAEIMKELEKRRQEEEERERREKEEREKERDREYGDSRLNISGEEAWRRRAAMSGAVPRSPSPPPNGDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNKPEKKLKSLNFNGPPTRVLLLRNMVGPGEVDDELEDEVGSECGKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKAIIDLDGRYFGGRVVRASFYDEERFGKNELAPMPGEVPGFF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1344 457 PIRSF SPF45 85 453 IPR040052 GO:0045292
Lele36g1344 457 Pfam G-patch domain 290 329 IPR000467 GO:0003676
Lele36g1344 457 Coils Coil 188 233 - -
Lele36g1344 457 MobiDBLite consensus disorder prediction 128 156 - -
Lele36g1344 457 ProSiteProfiles G-patch domain profile. 287 333 IPR000467 GO:0003676
Lele36g1344 457 PANTHER SPLICING FACTOR 45 SPF45 83 448 IPR040052 GO:0045292
Lele36g1344 457 MobiDBLite consensus disorder prediction 91 110 - -
Lele36g1344 457 MobiDBLite consensus disorder prediction 208 237 - -
Lele36g1344 457 SMART G-patch_5 285 331 IPR000467 GO:0003676
Lele36g1344 457 FunFam Putative splicing factor 45 351 437 - -
Lele36g1344 457 SMART rrm2_1 353 434 IPR003954 GO:0003676
Lele36g1344 457 CDD RRM_UHM_SPF45 350 446 IPR034653 -
Lele36g1344 457 Gene3D - 351 437 IPR012677 -
Lele36g1344 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 438 IPR000504 GO:0003723
Lele36g1344 457 MobiDBLite consensus disorder prediction 124 159 - -
Lele36g1344 457 SUPERFAMILY RNA-binding domain, RBD 355 440 IPR035979 GO:0003676
Lele36g1344 457 MobiDBLite consensus disorder prediction 250 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1344 Lele-ChrLele36 15521593 15525338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1344 293 341 C2H2 Transcription Factor Family AT5G26610 48.214 1.68e-06 47.8