Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1323 ATGGAGGATCGCGCGGGTTTAGGAGGTGGAGCATCTGTTAACATCGGAAGGGAAGAAGAAGAAGATGAATTTTGCAGTTGTTGTGAAGATGAAGAAGAAGAATTATGGAAAGAATCTGAGCAGTCGCTGGTGGAAAAGTTGAAGGAGGACTGTGATGAATATTCCGTAAAAATGTTCTTTAAGGGCTTGTCTATAGCCGGGATTGAAAATTCCACTTCTGGGTATTCTGGAATTGGCGTGGTCATGGAAAGACCATCTGGCCTTCCAGCTATCCAGGTGCAGAAAAAACTCGATTTTTATGCAGAAATGCTATTAGCTGAATACTTGGCTCTTATCGATGGCTTGCTGGAAGCTATGCGGAATAACATCCACCGGGTTTACGCTTTTACAGATTCTGAGTTATTGTACGATCAGGTAACATTTGAGAAGAATCTTGAGATGCCACTTTTGATAGCACTGAGAGAAAGGGTTCTGGAGCATGCCAATAATTTTGAATCATTTGTTCTTAATCTTGTTCCTAGCAATGATCTTGAGAAACCGCTGCAATTAGCTAAAGTATCTATTGGCCTTATCTCTCTTCCTATAGATGGCGGGAAAGCGCTTGAAAGCTGTTCTATTTGTTGTGAGGACAAGCCATTGCCTATAATGATCACAATGAAATGTTCGCACAAGTTTTGTTCACATTGTTTGAGGGCTTATGTTGATGGAAAGGTACAGTCTTGTCAAGTCCCTATAAGATGCCCTCAACCAAGATGCAAATATTACATCTCAACTGCAAAATGCAGGTCTTTTCTTCCATTTACCTCTTTTGAGTCTTTGGAGAAAGCCCTTGCAGAAGCAGATGTTTCAGATAGAATTTACTGTCCATTTCCAAATTGTTCTGTTCTCCTTGATCCCCGTGAATGTTTATCAGCTAGGGCTAGTTCATCTAGCCAATCAGACAATTCTTGCGTTGAGTGTCCTGTTTGTCAGAGGTTTATATGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTATGAGTTGTGAAGAGTACCAGAATTTACCTGAGGAGGAGAGACATGCTTCTGACATTACCTTGCATCGCCTAGCTCAAAATAAACGATGGAAGCGTTGTCAGCAGTGTCGTCGGATGATTGAGCTTACTCAAGGTTGTTATCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGAGCGGAATGCAGGGATGGCCAACAGACGTGTCAGTGTGTGTTTTGGGATGAAGACAACTCTGAAGACTCAGTGACCCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCCATGACCATGGATGCATACTCAGACCAAGAACGTTCCCAGCTTGCACTTATACAACGATTCCTCGCCGGGGGTTTCAGTCCGAGTGACCATCATCCTTACCAATCCCCTCCTCGTTGTACAGACTCCTATGTTGATGCCATGAAGGATCTACATCAGCTTCCGTGGCTCGAGCGATTCGTCTCCGTGATAAGTGACAACTACTATGAAGACTATATTCAGTAA 1551 0.4326 MEDRAGLGGGASVNIGREEEEDEFCSCCEDEEEELWKESEQSLVEKLKEDCDEYSVKMFFKGLSIAGIENSTSGYSGIGVVMERPSGLPAIQVQKKLDFYAEMLLAEYLALIDGLLEAMRNNIHRVYAFTDSELLYDQVTFEKNLEMPLLIALRERVLEHANNFESFVLNLVPSNDLEKPLQLAKVSIGLISLPIDGGKALESCSICCEDKPLPIMITMKCSHKFCSHCLRAYVDGKVQSCQVPIRCPQPRCKYYISTAKCRSFLPFTSFESLEKALAEADVSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCQRFICVDCEVPWHSSMSCEEYQNLPEEERHASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAECRDGQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMTMDAYSDQERSQLALIQRFLAGGFSPSDHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1323 516 SUPERFAMILY RING/U-box 352 418 - -
Lele36g1323 516 SUPERFAMILY RING/U-box 201 280 - -
Lele36g1323 516 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Lele36g1323 516 ProSiteProfiles Zinc finger RING-type profile. 204 251 IPR001841 -
Lele36g1323 516 SUPERFAMILY Ribonuclease H-like 73 175 IPR012337 -
Lele36g1323 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 429 IPR031127 GO:0004842|GO:0016567
Lele36g1323 516 Pfam IBR domain, a half RING-finger domain 280 341 IPR002867 -
Lele36g1323 516 Gene3D - 339 464 - -
Lele36g1323 516 Pfam Reverse transcriptase-like 70 173 IPR002156 GO:0003676|GO:0004523
Lele36g1323 516 FunFam RBR-type E3 ubiquitin transferase 199 284 - -
Lele36g1323 516 Gene3D - 56 189 IPR036397 GO:0003676
Lele36g1323 516 FunFam RBR-type E3 ubiquitin transferase 56 190 - -
Lele36g1323 516 FunFam RBR-type E3 ubiquitin transferase 339 464 - -
Lele36g1323 516 SUPERFAMILY RING/U-box 272 346 - -
Lele36g1323 516 SMART ibrneu5 271 341 IPR002867 -
Lele36g1323 516 SMART ibrneu5 351 410 IPR002867 -
Lele36g1323 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 284 IPR013083 -
Lele36g1323 516 Coils Coil 37 57 - -
Lele36g1323 516 ProSiteProfiles TRIAD supradomain profile. 200 416 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1323 Lele-ChrLele36 15402974 15406491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1323 54 401 C3H Transcription Factor Family AT2G19610 27.824 2.81e-31 123