Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1240 ATGGACGAGCAGAAGCGAAGCGTGCCGGTTTTGCCATGGATGCGGGACCCTGTTGATGTCACTTTATCTGAAGAATGCCCTCTCGAATGCGTTCCTTGTCTTCACCCCAAGTTGAAGTTGGCATTGCAGAATATGGGCATCTCTATGCTCTTTCCTGTGCAAGTTGCAGTTTGGGAAGAGACCGTTGGTCCTGGTAATTTTGAGCGAGATCTTTGTATAAATTCTCCCACCGGAAGTGGCAAAACTTTAGCTTATGCTCTGCCAATTGTGCAAATGCTGTCAAACCGTGTTGTAAAATGCTTGCGAGCTTTAGTGGTGGTGCCCACTCGTGATCTTGCCTTACAGGTCAAAGAAGTTTTTGACGCCATTGCATCTCCATTAGGTTTACATGTTGGCTTGGCTGTTGGTCAATCTTCAATAGATGATGAGATTTCTAAGCTTGTGGATATACCAGGATATGAGGTAGGCATGTGTTACGATCCGGTAGATATATCTCTCAATTACCAACTTGGCTTCCAAAGTAAGGTGGATATATTGGTAGCTACTCCTGGAAGGCTCATGGATCACATCACCACTACTAAAGGGTTCACACTTGAGCATCTTTATTACCTTGTGGTTGATGAAACAGATCGGCTTCTCCGGGAGGCCTACCAATCCTGGTTGCCTACCGTGTTGGAACTAACTCGATCTAAGGATGGGAATATTTATCCACCAGCTGGTTCATTTCTTCTTAATTCATTTAGTGCATTAGGCACTAGAAGGAGATGTGGGCCTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGTTGGCAAAAATGGTTCTATCTGCAACAATAACCCAGGACCCAGGAAAGCTTGTTCAACTTGATCTACATCACCCAATATTCTTGAAAGCTGGGCAAATGCGTTATAGGCTTCCAGAAAATTTGGAGTCACTTAAAGTGATCTGTGACACGAAGGTCAAACCCTTGTATTTAGCTGCCCTTTTAAAAACGTTGGGAGGAGAAAAATGCATAGTTTTTACGAAATCTGTGGATTCAACACATCGTCTGTGCAAATTACTGAACTATTTCCGTGATCTTCAAATTAAGATCAAGCAATATTCTAGTCTTCAACCTCAACGTATAAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGCGTTTCAAGTGCTTGTGTGTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTGAGAAATGTTATTAATTATGACATGCCAAAATACATAAAGACTTACGTTCATCGAGCTGGTAGGACTGCAAGAGCTGGGCAGGCCGGGCGTTGCTTCACACTGATGTCCAAAGATGAGGCTAGACGATTTAAGAAGTTGTTGCAGAAGGCTGATAACAGTTCTTGCTCTGATCACACTCTGCCCTCCAGTTTGATTGAAGAACTTCACCCTACTTACCAATCAGCGCTGAAAAGATTTAAAGAGACAATTTCAGAAGCTAGAAAGAAGAAACCCAAGAGCAGTTCAGAGACTTCTCAAGCAAACAAAGTGAATGGAAAAGAGTATACAGGGGAATAG 1557 0.4303 MDEQKRSVPVLPWMRDPVDVTLSEECPLECVPCLHPKLKLALQNMGISMLFPVQVAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIDDEISKLVDIPGYEVGMCYDPVDISLNYQLGFQSKVDILVATPGRLMDHITTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDGNIYPPAGSFLLNSFSALGTRRRCGPERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPIFLKAGQMRYRLPENLESLKVICDTKVKPLYLAALLKTLGGEKCIVFTKSVDSTHRLCKLLNYFRDLQIKIKQYSSLQPQRIRSKTLKEFRKGAFQVLVCSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQAGRCFTLMSKDEARRFKKLLQKADNSSCSDHTLPSSLIEELHPTYQSALKRFKETISEARKKKPKSSSETSQANKVNGKEYTGE 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1240 518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 297 IPR014001 -
Lele36g1240 518 Gene3D - 26 308 IPR027417 -
Lele36g1240 518 SMART ultradead3 46 316 IPR014001 -
Lele36g1240 518 MobiDBLite consensus disorder prediction 490 518 - -
Lele36g1240 518 Pfam DEAD/DEAH box helicase 52 285 IPR011545 GO:0003676|GO:0005524
Lele36g1240 518 Pfam Helicase conserved C-terminal domain 322 433 IPR001650 -
Lele36g1240 518 CDD SF2_C_DEAD 315 441 - -
Lele36g1240 518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 475 IPR001650 -
Lele36g1240 518 CDD DEADc_DDX51 38 294 - -
Lele36g1240 518 Gene3D - 311 516 IPR027417 -
Lele36g1240 518 PANTHER RNA HELICASE 34 490 - -
Lele36g1240 518 SMART helicmild6 352 433 IPR001650 -
Lele36g1240 518 MobiDBLite consensus disorder prediction 503 518 - -
Lele36g1240 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 455 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1240 Lele-ChrLele36 14793197 14798160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1240 70 448 Eukaryotic Initiation Factors Gene Family AT3G13920 24.737 7.25e-28 114