Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1200 ATGAGTCTCAGTCACAGCCATAGTCACGACGACACCACGACAACGATCACCGCCGCAACCACCGAGAAGCTCGACGACAGCCACGAGCTCGACATGGTGATGCCGGGGTTCCGATTTCACCCGACAGAAGAAGAACTAGTGGAGTTCTACCTTCGCCGTAAAGTTGAGGGAAAGCGTTTCAACGTTGAGCTCATTACTTTCCTTGATCTTTATCGCTATGACCCCTGGGAGCTTCCAGCTCCCAAAGGTATCAGAACCAGTTGGATCATGAACGAGTATCGCTTACCTCATCACGACACTGAACGATACCAAAAGGCTGAGATATCGCTGTGTCGAGTGTACAAGAGACCAGGAGTAGAAGACCATCCTTCTCTTCCTCGTTGTCTGCCAACGAGGCCATCTTCTTCCTCGCGAGCTTCTTCACACACTTCAGACAAAAGCATCAGTAAGCAAAGCGAAACGTTTCATCATCATCATCCTCAGAGCAACAACAACGTAGAATTTTTGGGACAAAGTACAATGATGAATAACTACAATCATCAGTTAGGGAAAACATCTTCAGATAATAATAACGATCAAGGTGCCTCCATAGCTCATGGGCTTTCCAAAGTACAATGCAACAATCCCCCTCTTACTTACCCTAATTCCTCAGCTTCAACAATGGCTCCTCCATTTCCATTAATTGAGGACGAAGACTTGCTGATGCTCACTAATATGCAGCCATTGATAATGAAGCAAGCTCAAGCTTCTGCTTCCTCCTTCTTCCTCACACCAACTGGTAATAATAATCATAATAATAATTCTTCTTCAGTTTCTTCATCAAACGTGGAGGATCTCAATAGGCTCTTGAGTTATAATCAGCTGCAACAATACTTCCACAGTAACAATGCTCCAAGCCATCATCATCAACAACAGCAACAACAGTTCTCTAATTTGCTGCTGCAACCTCAACAACTGATGGCTCTGATGACCACTTCTTCGCCGTCGACCCTACCAACTTCGCTTCCATTAACGACACCAACGACGACGAAGACGGCAACTACCACCACGACCTTCTCTGACAAACTGTGGGAGTGGAATAATCTCGTCCCTGCAGAGCCAAGTAGTAACAGAGAGTACAGCAACATGTCCTTCAAGTAA 1140 0.457 MSLSHSHSHDDTTTTITAATTEKLDDSHELDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAPKGIRTSWIMNEYRLPHHDTERYQKAEISLCRVYKRPGVEDHPSLPRCLPTRPSSSSRASSHTSDKSISKQSETFHHHHPQSNNNVEFLGQSTMMNNYNHQLGKTSSDNNNDQGASIAHGLSKVQCNNPPLTYPNSSASTMAPPFPLIEDEDLLMLTNMQPLIMKQAQASASSFFLTPTGNNNHNNNSSSVSSSNVEDLNRLLSYNQLQQYFHSNNAPSHHHQQQQQQFSNLLLQPQQLMALMTTSSPSTLPTSLPLTTPTTTKTATTTTTFSDKLWEWNNLVPAEPSSNREYSNMSFK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1200 379 MobiDBLite consensus disorder prediction 129 148 - -
Lele36g1200 379 MobiDBLite consensus disorder prediction 122 166 - -
Lele36g1200 379 MobiDBLite consensus disorder prediction 326 346 - -
Lele36g1200 379 Pfam No apical meristem (NAM) protein 35 81 IPR003441 GO:0003677|GO:0006355
Lele36g1200 379 SUPERFAMILY NAC domain 31 116 IPR036093 GO:0003677|GO:0006355
Lele36g1200 379 MobiDBLite consensus disorder prediction 1 21 - -
Lele36g1200 379 Gene3D NAC domain 42 80 IPR036093 GO:0003677|GO:0006355
Lele36g1200 379 Gene3D NAC domain 81 119 IPR036093 GO:0003677|GO:0006355
Lele36g1200 379 MobiDBLite consensus disorder prediction 1 22 - -
Lele36g1200 379 ProSiteProfiles NAC domain profile. 33 181 IPR003441 GO:0003677|GO:0006355
Lele36g1200 379 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 32 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1200 Lele-ChrLele36 14488206 14490733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1200 32 84 NAC Transcription Factor Family AT2G02450 92.453 5.52e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele36g1200 NAM 4.3e-11 No_clan