Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1182 ATGGCATTTATGGCTTCAAATCAGACCCCTGGTGGAAACCAAGTAGCAGGGCCAACCAACGATGCCTTGTACAAGGAATTGTGGCATGCATGTGCTGGTCCCCTTGTCACTCTTCCCTGTGAAGGAGAGCGAGTTTATTACTTTCCACAGGGGCATATGGAACAGCTTGAGGCATCTGTGCATCAAGGAGCAGAGCAACAAATGCCTTCCTTCAACCTGCCATCTAAAATTTTATGCAAAGTGGTCAATGTTCTTCTTCGGGCTGAACCTGAGACCGATGAAGTATATGCACAGATAACTTTGCTTCCAGAACCAGATCAAAGCGAGTTGAGTAGTCCAGATGATCCTCTGCCAGAACCCGCAAGATGCACTGTCCATTCATTTTGTAAAACACTCACCGCATCTGACACCAGCACCCATGGTGGATTTTCTGTTCTTCGGAGACATGCAGATGAATGTTTGCCTCCCTTGGACATGTCTCAGCAGCCACCGTGGCAAGAATTGGTTGCAAGTGATTTGCATGGGAATGAATGGCATTTTAGACATATTTTCCGAGGGCAACCTAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAGAAATTAGTGGCTGGTGACGCGTTTATATTCCTGAGAGGTGAAAATGGGGAGCTACGTGTTGGAGTTAGGAGGCTGATGAGTCAGCAAAATAACATGCCCTCATCTGTTATATCAAGTCACAGTATGCATCTGGGTGTTTTGGCTACTGCGTCTCATGCAATTGCCACTGGAACTCTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGTGTCAACAATTATCTTGAAGCTAAGAGTCACAAGTTTTCCGTTGGGATGAGATTCAAGATGAGATTCGAAGGTGATGAAGTTCCTGAAAGAAGGTTTAGTGGTACAATTGTTGGGGTTGGAGATAATATCTCACCTGTCTGGGCAGACTCTGAGTGGCGCTCGTTAAAGGTTCAATGGGATGAACCGTCTTCAATCTTGCGACCTGATAGAGTTTCTCCTTGGGAATTGGAGCCACTTGTGAATACCACCACTCCTGCTAATTCCCAACCAACCCAAAGAAAGAAGAGGGCGCGTCCTCCCCTGCTACCATCAGCAGTGCCTGATTCTTTGCATGGCGTCTGGAAATCAGTTAGTAAATCTCCAGTGTTCTCTTATGGTGATCCCCAACATGGACGAGACTTCTATTCTGCATCGAAGTTCAATCCTACTGCTACTAACTTTCTAGGTATTGGTGGGAATAGTCCTATGGGGGCTGTTTCTAATAATGCAACTTATTGGTCCAATAGAGTGGAGAACTCTTTGGAGTCAATAGCCCCTAAAGAATCCCTGGAAAAGAGACAAGGCACTAGAAATGTCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGTAGAAGAAAGTATGCTACCAGCCACATTGTTAGGAAGGATAGGAGATGATAAGTCTGCTCAATATGTTGATGCTGACTCTGATTGGCAGTCTGAACCATCAAATGTTAATCGTGCTGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCGTGCTTGCAGTCTCCCCGTGAAGCATTAAGCAAGCAAATAAGGAGTTGCACGAAGGTTCACATGCAAGGGATGGCTGTTGGAAGGGCTGTGGACTTGACTCGGTTTGATGGATTTGAAGATCTGCTTAAGAAATTGGAGGAGATATTTGACATCAAGGGAGAACTTTGTGGATCCAATAAAACTTGGCAAATTGTCTACACCGATAATGAAGATGATATGATAATGGTCGGAGATATTCCATGGAATGAGTTCTGTAGTGCCGTGAGGAAAATTTTCATTTACACCGCAGAGGATGTGAAGAAGCTTTCGCCCAAAGTACTACTTTCATTTGGTGAAGAAGCTAAAACAAGCAAGCCAGACTCTGAAGCAGTAGTTAATGCTGAGGACCAGGATCAGTCATCTATTGTGGGGCCTAGTTGTTAA 2031 0.4461 MAFMASNQTPGGNQVAGPTNDALYKELWHACAGPLVTLPCEGERVYYFPQGHMEQLEASVHQGAEQQMPSFNLPSKILCKVVNVLLRAEPETDEVYAQITLLPEPDQSELSSPDDPLPEPARCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMSQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNNYLEAKSHKFSVGMRFKMRFEGDEVPERRFSGTIVGVGDNISPVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVNTTTPANSQPTQRKKRARPPLLPSAVPDSLHGVWKSVSKSPVFSYGDPQHGRDFYSASKFNPTATNFLGIGGNSPMGAVSNNATYWSNRVENSLESIAPKESLEKRQGTRNVCRLFGIQLLENSNVEESMLPATLLGRIGDDKSAQYVDADSDWQSEPSNVNRADVPSVSCDAEKSCLQSPREALSKQIRSCTKVHMQGMAVGRAVDLTRFDGFEDLLKKLEEIFDIKGELCGSNKTWQIVYTDNEDDMIMVGDIPWNEFCSAVRKIFIYTAEDVKKLSPKVLLSFGEEAKTSKPDSEAVVNAEDQDQSSIVGPSC 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1182 676 Pfam AUX/IAA family 548 640 IPR033389 -
Lele36g1182 676 MobiDBLite consensus disorder prediction 649 676 - -
Lele36g1182 676 Gene3D - 291 364 - -
Lele36g1182 676 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Lele36g1182 676 CDD B3_DNA 126 228 IPR003340 GO:0003677
Lele36g1182 676 ProSiteProfiles PB1 domain profile. 550 643 IPR000270 GO:0005515
Lele36g1182 676 FunFam Auxin response factor 291 363 - -
Lele36g1182 676 Gene3D - 125 230 IPR015300 -
Lele36g1182 676 SMART B3_2 128 230 IPR003340 GO:0003677
Lele36g1182 676 MobiDBLite consensus disorder prediction 360 374 - -
Lele36g1182 676 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele36g1182 676 Gene3D - 545 639 - -
Lele36g1182 676 MobiDBLite consensus disorder prediction 662 676 - -
Lele36g1182 676 MobiDBLite consensus disorder prediction 360 384 - -
Lele36g1182 676 FunFam Auxin response factor 126 230 - -
Lele36g1182 676 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele36g1182 676 SUPERFAMILY CAD & PB1 domains 553 627 - -
Lele36g1182 676 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Lele36g1182 676 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1182 Lele-ChrLele36 14357038 14368519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1182 5 673 B3 DNA Binding Superfamily AT1G59750 68.101 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele36g1182 AUX_IAA 3.5e-11 CL0072