Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1141 ATGGAGACACAGTTCAGCCACTCTCTGTTCGACAGGCGCCACATCTTCAAGTCTAAGAATCCCGCCATTAAATGGGTTAAAGAATGGGTTCCCCAGGATGTTGTGGCCACTGGTGGGAAGTGCATGCTTTACAGATGGGTAAGAGAGGAATCCTTAAAGGCCTTGAAGGATAAGGAAAAAGAACCATCAGTGCCTGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTCTGTAGCTTTGAAGGCTGTGGGAAAACTTTTATAGATGCTGGTGCTTTGAGAAAGCATTCTCACATCCATGGAGAAAGGCTGTTTGTTTGTCGCCATGACGGTTGTGGAAAGAAATTTCTGGATAGTTCAAAGCTGAAAAGGCATTTTCTCATCCATACCGGGGAAAGGCCTTATGTGTGTCCCGTTGAAGGCTGTGGGAAGGCCTTCTCCCTCGATTTCAACTTAAAGTCTCACATGAAAACACATTCACATGAGAACTACCATGTCTGCAAATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAAAATCACATTGCGGCACACCATGAAAAGGTTGGCCAATGTCTTCCTATTTTTACTTTACCACTTAATCCATGCACAATAGTTTATGCTAATTATTTCGGAGAGATTAAATTTTCAGTTTTGTTCTTACAGAATGGATCTGTGGATCCGAATGGGACAAAGTATAATACTCCGCCTTCAGAGAAGGCGACTAAAGCTACGAAACCTTCTGGGGGTGCTTCTGCTTCTGCATCATCTGATCGTCCTTTTGTTTGCCCTTATGAAGAGTGTGAAAAGGCCTATATCCATGAATATAAACTTAAACTCCATTTGAAGAGGGAGCATCCTGGGCATGGGGATGAAAATGTTGCAGAGAATAACAACGGTCAGGCTAATAATAACAATGCTGACAATGAATTGGATGAAGCAAGCGATCAAGCCTATAATGGTGGTGGGAAACGATCAAATGGTAGAATTCAGAAGCAAAGTAAGCCCAAACCAAATTTGAAGATGCCTCCATTAAAAATATCGCGGCGCAAAGCATCATCGTCGACACCCTCTTCTGTGACCCCCATGAAGGTGATTAAGAAACCTTGGTCGGTGAAAGAAGAGACCTTCGAGGAAGAAGACAGTGAAGAAACAGAGGAGGATCGGGACAACGTTGAAGATGGTTGGAGATATGCAGGAAACAACGAGGATGATGATGAAGAAACAGAATATGAAGACTGA 1257 0.4304 METQFSHSLFDRRHIFKSKNPAIKWVKEWVPQDVVATGGKCMLYRWVREESLKALKDKEKEPSVPEPEPEPTTEVLFLCSFEGCGKTFIDAGALRKHSHIHGERLFVCRHDGCGKKFLDSSKLKRHFLIHTGERPYVCPVEGCGKAFSLDFNLKSHMKTHSHENYHVCKYPDCGKRYAHEYKLKNHIAAHHEKVGQCLPIFTLPLNPCTIVYANYFGEIKFSVLFLQNGSVDPNGTKYNTPPSEKATKATKPSGGASASASSDRPFVCPYEECEKAYIHEYKLKLHLKREHPGHGDENVAENNNGQANNNNADNELDEASDQAYNGGGKRSNGRIQKQSKPKPNLKMPPLKISRRKASSSTPSSVTPMKVIKKPWSVKEETFEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1141 418 MobiDBLite consensus disorder prediction 292 418 - -
Lele36g1141 418 Gene3D Classic Zinc Finger 240 310 - -
Lele36g1141 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Lele36g1141 418 MobiDBLite consensus disorder prediction 299 318 - -
Lele36g1141 418 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Lele36g1141 418 Gene3D Classic Zinc Finger 77 101 - -
Lele36g1141 418 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lele36g1141 418 ProSitePatterns Zinc finger C2H2 type domain signature. 268 291 IPR013087 -
Lele36g1141 418 SMART c2h2final6 166 190 IPR013087 -
Lele36g1141 418 SMART c2h2final6 136 160 IPR013087 -
Lele36g1141 418 SMART c2h2final6 106 130 IPR013087 -
Lele36g1141 418 SMART c2h2final6 77 101 IPR013087 -
Lele36g1141 418 SMART c2h2final6 266 291 IPR013087 -
Lele36g1141 418 SUPERFAMILY beta-beta-alpha zinc fingers 261 289 IPR036236 -
Lele36g1141 418 Coils Coil 302 322 - -
Lele36g1141 418 FunFam zinc finger transcription factor YY1 163 194 - -
Lele36g1141 418 ProSitePatterns Zinc finger C2H2 type domain signature. 138 162 IPR013087 -
Lele36g1141 418 SUPERFAMILY beta-beta-alpha zinc fingers 72 117 IPR036236 -
Lele36g1141 418 MobiDBLite consensus disorder prediction 232 260 - -
Lele36g1141 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 296 IPR013087 -
Lele36g1141 418 FunFam Putative zinc finger protein 143 103 133 - -
Lele36g1141 418 FunFam Zinc finger protein 410 134 161 - -
Lele36g1141 418 FunFam Zinc finger transcription factor YY1 241 310 - -
Lele36g1141 418 FunFam zinc finger transcription factor YY1 77 102 - -
Lele36g1141 418 Gene3D Classic Zinc Finger 102 134 - -
Lele36g1141 418 Gene3D Classic Zinc Finger 135 164 - -
Lele36g1141 418 Gene3D Classic Zinc Finger 165 194 - -
Lele36g1141 418 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Lele36g1141 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 101 IPR013087 -
Lele36g1141 418 MobiDBLite consensus disorder prediction 232 264 - -
Lele36g1141 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Lele36g1141 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 190 IPR013087 -
Lele36g1141 418 MobiDBLite consensus disorder prediction 325 339 - -
Lele36g1141 418 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 15 393 - -
Lele36g1141 418 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Lele36g1141 418 MobiDBLite consensus disorder prediction 381 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1141 Lele-ChrLele36 14018431 14022331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1141 10 404 C2H2 Transcription Factor Family AT4G06634 55.911 3.48e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele36g1141 zf-C2H2 0.00016 CL0361