Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1128 ATGGCCAATGGTACGGCAATGAAGCTTCCTCCTCGCGACGATTGCTGCCCTGTCTGCCATGGCGATTTCAACCTCCCATGCCGCACCTCCTGCTCCCACTGGTTCTGCGGAGAGTGCATATTGCGTGTATGGCTACATGGAGATGCAACGAAGCAATGCAAATGCCCAATGTGCTGTCGCCATTTTTCTAGTCTGGCACCCTTTCAAGAAGCATTTGAATGTAGCCAGAACCCAGAATCAAACAGAATCATGGAAAATGTGAGAAGGTACAACAGGTTGCACATTGGGGGCATGCAAGGTCTCATGCAGAAATTTTTTGATCTCCCATTTCTTATTCGGATGGCTCTACAAGATATGATGGATCCTGATAAAACAAGTTCTTACTTGACTAGGGTTCGCCTCTTTGCAATGGTGCTTGGCATAAGTTATGTTCTCAACCCATTCGAATTTCTTCCATTCGCTAAAAGAGACATATTAAACTTGTTTGACCTCTATGCAACTACATTTGTAACCATCATCCACATCATCGCGCTGTGCCGTGCAAGGCGTGTAATCAGGCGATAA 564 0.4592 MANGTAMKLPPRDDCCPVCHGDFNLPCRTSCSHWFCGECILRVWLHGDATKQCKCPMCCRHFSSLAPFQEAFECSQNPESNRIMENVRRYNRLHIGGMQGLMQKFFDLPFLIRMALQDMMDPDKTSSYLTRVRLFAMVLGISYVLNPFEFLPFAKRDILNLFDLYATTFVTIIHIIALCRARRVIRR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1128 187 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Lele36g1128 187 Pfam Zinc finger, C3HC4 type (RING finger) 16 58 IPR018957 GO:0046872
Lele36g1128 187 SUPERFAMILY RING/U-box 8 63 - -
Lele36g1128 187 SMART ring_2 16 58 IPR001841 -
Lele36g1128 187 PANTHER UNCHARACTERIZED 6 183 IPR038896 GO:0061630
Lele36g1128 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 95 IPR013083 -
Lele36g1128 187 ProSiteProfiles Zinc finger RING-type profile. 16 58 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1128 Lele-ChrLele36 13931114 13933762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1128 10 137 C3H Transcription Factor Family AT4G33940 45.312 3.32e-43 141