Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele36g1111 ATGGATATAAGAGGTCGTCCTCGCGATGTCGTCAATGGCGTTGGAAGAACCAGAACCTTCCATTACTTCTGGTGCCAAACTTGCCAGGGTGCCGTTAGAATCCCCTCCTCTGCAAACCCTAATTTCTCTTTCTGCCCCTTTTGCTCCCATCAATTACACATCGAACTCGATATCACGAGGCCCAGGCTTCTCATGAACAATCCTCCAAATAATTCACAGCCTTCACCTGCTGCTCAATTGATCAACGGATTGGCTCTCATTCTGGATCCATCTACGAGAGAGCGAAACGCTCGCTTGCATCGAACAGTTCAATGGATTGAAGAAACCGAAGAAGGACCGAATCCTCAGACCTGGATCACTCTCCGATTTGTTAGACCAACTCGTCCACAAAGACACATTCCGGGAACCACCGACGACAACAGCCCACCTCCGGCGGCAGATTCCGCCATCGAAGGGTTACCGACGGTCAAACTAACGGAAACACGATTGGCTAGCGATCCGAATTGCGCGATTTGCAAAGACGAGTTTCAGATTGATATGGAAGTGAAAGAGTTACCGTGCAAGCATTTCTATCATTCCGATTGTATTACTCCTTGGCTTCGCATTCACAATACATGTCCGATCTGCCGCCATGAGCTGCGAAGTGCTTCATCTTCGTCTTCTTCTTATTATTCTAATTACCGCGAAGGAGATTTCTCATATTTTGACTATCGATTTAGATATGGGTTTGAAGAAGCTACACACGGCTTGAATTGGCTTTGGAGCCAGCTTGTTTCTTTGCGACCTGTGCGTGCATTTATGGAATGGACTCAGAGATATTTGTTTGATTTCTTGGAAAATCGTCATGAACGAGGAGGTAAGCTTCGGGGATCAACCTTTTTGAAGCACTAA 891 0.4658 MDIRGRPRDVVNGVGRTRTFHYFWCQTCQGAVRIPSSANPNFSFCPFCSHQLHIELDITRPRLLMNNPPNNSQPSPAAQLINGLALILDPSTRERNARLHRTVQWIEETEEGPNPQTWITLRFVRPTRPQRHIPGTTDDNSPPPAADSAIEGLPTVKLTETRLASDPNCAICKDEFQIDMEVKELPCKHFYHSDCITPWLRIHNTCPICRHELRSASSSSSSYYSNYREGDFSYFDYRFRYGFEEATHGLNWLWSQLVSLRPVRAFMEWTQRYLFDFLENRHERGGKLRGSTFLKH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele36g1111 296 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Lele36g1111 296 SMART ring_2 169 209 IPR001841 -
Lele36g1111 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 216 IPR013083 -
Lele36g1111 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 213 - -
Lele36g1111 296 FunFam E3 ubiquitin-protein ligase RING1-like 134 216 - -
Lele36g1111 296 SUPERFAMILY RING/U-box 149 215 - -
Lele36g1111 296 Pfam Ring finger domain 168 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele36g1111 Lele-ChrLele36 13804063 13804953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele36g1111 6 274 C3H Transcription Factor Family AT1G68180 34.256 8.51e-39 134